Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02958 ATGGACGCTGTGTTTGACTTTTTGCTATTTGATTCAGGTTCGAGATCCATGATGAGTTTCGAAGGAGAAGGAGGGAAGGGGTGTAATGGTTCCTTCTTCCGCGCGTTTGATATAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAGCCTGAGAAGAAGCGCCGTCTCTCTGCCAACCAGGTTCAGTTCCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTAGCCAAAGACCTTGGTCTGCAGCCACGACAGGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGGTGGAGGACCAAACAGCTCGAGAAGGATTACGAGATTCTGCATGACAGCTTTGAGAGTCTCAAGGCCAACTACGAAAGCCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTGAGTGAGAAGGTGGTTGCAAGAGAGAAAGAAGAGGAGCAGTTGAAGCAGGGTGAAAGGGGAACGAAGGGGTTGCAGGAACAGGATCAGGAACCACCCCAAAGGCCTATACTTGATTCAGTTTCGGAGGGTGAAGGATCCAAAGTGTCTTGCGTTGTTGGGGGTTGCAAACAGGAAGATATCAGTTCAGCCAGGAGTGACATTTTGGATTCCGATAGCCCGCATTACACGGATGGAGTTCACTCAGCAGTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCAGACATGTCACAAGATGAAGAAGACAACCTCAGCAAGAGTCTGTACCCTTCCTACCTCTTTCCCAAACTTGAAGATGCCGATTACTCCGACCCCACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGCCCTTTGGACCTGGGAGTACTAA 894 0.4877 MDAVFDFLLFDSGSRSMMSFEGEGGKGCNGSFFRAFDIDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWRTKQLEKDYEILHDSFESLKANYESLLKEKDKLKSEVAHLSEKVVAREKEEEQLKQGERGTKGLQEQDQEPPQRPILDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHALWTWEY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02958 297 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Phac3g02958 297 MobiDBLite consensus disorder prediction 155 172 - -
Phac3g02958 297 MobiDBLite consensus disorder prediction 155 189 - -
Phac3g02958 297 FunFam homeobox-leucine zipper protein ATHB-6-like 58 104 - -
Phac3g02958 297 Pfam Homeobox associated leucine zipper 110 151 IPR003106 GO:0006355|GO:0043565
Phac3g02958 297 Coils Coil 123 174 - -
Phac3g02958 297 CDD homeodomain 55 111 IPR001356 GO:0003677
Phac3g02958 297 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Phac3g02958 297 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Phac3g02958 297 Gene3D - 49 117 - -
Phac3g02958 297 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Phac3g02958 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 209 IPR045224 GO:0003700
Phac3g02958 297 SUPERFAMILY Homeodomain-like 42 112 IPR009057 -
Phac3g02958 297 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Phac3g02958 297 SMART HOX_1 53 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02958 Phac-Chr3 31163958 31166302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02958 13 228 Homeobox Transcription Factor Family AT3G01470 43.636 5.71e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac3g02958 Homeodomain 9.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02958 - - gmx:100799054 496.508