Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02903 ATGGGAAGGGTTAAATTGAAGATAAAGAAACTAGAGAGCATAAGCAATCGACATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGCGATATAGACATTCTCCTTCTTATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGGTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAATGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAACTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATGTAGAGAAGATCAACAATTTAGAGCATCTTAGGCAAATGGAAGATTCGTTACGAGAATCAATCAATCGAGTGGTCCTGCAGAAGGAAAATTTAGGAAAGCACCAATTCATTTCACTTGAATGTGCTAACCAGTTACAGGAAGGGATGACATTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTTAGTGATAATACCAATAGAGACGCTGAGTGTTCAACTGACATTTCAATTCCAAGCTATTCAAGTTATATTGGGAGCCACAAACTTGAAGTTGGTAGTTCTCCCCAAGTGACTACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGTTAAATGGAACAACATACTTGAATGTACAACGTTGTGACCAATTTACATTCCCTCCTCCACAAGATATTGAGGAAGCAAAACATTTACCAACGTTGAACAATAAATCAAACACCGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTCGAAAATGGACATCAATTTTGGAATTCAGCTTCGGGGTCTTGTGGTATTGCCATGTATAATGAGAACGGCTACCACAGGTAA 1062 0.3795 MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFGQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVRVLQAQLTEVHQRLSYWNNVEKINNLEHLRQMEDSLRESINRVVLQKENLGKHQFISLECANQLQEGMTLPLMMASLQESQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNRDAECSTDISIPSYSSYIGSHKLEVGSSPQVTTLGQGGGAMNELNGTTYLNVQRCDQFTFPPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENGHQFWNSASGSCGIAMYNENGYHR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02903 353 Coils Coil 77 97 - -
Phac3g02903 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Phac3g02903 353 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Phac3g02903 353 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Phac3g02903 353 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Phac3g02903 353 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac3g02903 353 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac3g02903 353 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac3g02903 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Phac3g02903 353 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac3g02903 353 Coils Coil 114 134 - -
Phac3g02903 353 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Phac3g02903 353 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02903 Phac-Chr3 30716079 30721269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02903 1 276 Type I MADS-box Gene Family AT2G03060 50.526 5.02e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac3g02903 SRF-TF 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02903 - - pvu:PHAVU_003G189100g 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g02903 3 30716079 30721269 Phac3g02903 3 30716079 30721269 ECH