Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02808 ATGGCCGCAAAATCAATCACACCCGACGCCGTTTCGACGCTCCTCGCTAACCCTTCCCCCGATTCTTCGTCGGATCTTTCCGACATCGTTGTTCAAGTAGTTGATCTGAAGCCTAGTGGCAATAGATACATGTTCTCTGCCAGTGATGGAAAAAAGAAACTGAGGGCGATTCTTCCTTCGAATATGTATTCTGAGGTTCTTTCCGGGAACATTCAAAACCTAGGTCTTGTTCGCATTCTTGATTACACTCTCAACGACATCCCTAACAAATCTGAAAAGTACCTTATTGTCACGAAATGTGAGCCGGTATCTCCCGCTCTTGAAAAGGAGATCAAGAGCGATGAGCCTGTGATTCTTTTGAAACCCAAGGAAGAGGTTGGTGTGAAGAGTGAAGGTGCTGCTGGGATTCTTTTGAAGCAAAAGCAGGACGTGGTGACAAAATCTGCTGCCCAGATTCTAAATGAACAACATAGAAATTCGGCTCCTGCTGCACGCTTGGCAATGACACGTAGGGTACGTCCTCTTGTTTCGTTGAACCCTTATCAGGGTAATTGGACGATAAAGGTTAGCGTTACCAGCAAAGGGAACATGCGTACCTATAAGAATGCTAGGGGTGAAGGTTGTGTATTCAATGTTGAATTGACTGACGAAGAAGGTACTCAAATCCAGGCAACCATGTTTAACGATGCCGCGAGGAAATTTTATGACAGATTTGTTCTGGGAAAGGTTTACTATATTTCGAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACGCTCAATGAGAATTCTGAGGTGGAAGAGGTGGCGGACGAAGCAAGTTTTGTCCCCGAAACAAAATTTAGCTTTGTCCAGATTGATCAGTTAGGTCCTTATGTCAACAAGTCTGAACTTGTGGATGTCATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAACGAGAGCATTCCAAAGCGCGACATTACTATTGCTGATGAAACGAAGAAGACAGTGGTTGTGTCGTTGTGGAATGATCTTGCTACTAACACGGGACAAGAGTTACTGGACATTGTTGATAAATCTCCTGTTGTTGCAATCAAATCCCTCAGGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAAGCAGAAGTGTAGTTCTGGTAAATCCAGACGTACCCGAAGCTAAGAAACTCAGAAGCTGGTATGAATTTGAAGGAAAAGATGCTGCAATGGACGCTCTAGGTTCTGGTTCAAGTCCGACATCTAATAATGGGATTAGATCGGTGTACTCTGATCGTGTTCCTCTTTCTCACATAACCTCAAACCAATCATTGGGGGATATGAAGCCTGCATTTTTCAGTCTTAAAGGATATATAAGCTTCATAAAGCCTGACCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCATTGGTTCTGGATATTGGTGCGAAGGATGCCAGAAAAGCGATGAACAGTGCAGTTTAAGGTATATTATGGTTGCTAGAGTTTGCGATACAAGTGGTGAGGCTTTCATCTCGGTTTTTAATGATGAAGCTGAGAAGATTGTTGGATGCTCTGCTGATGACTTAGATGACCTTAAATCACAAGAAGGAGAAGATAATCCTTATAATCTGAAATTGAAGCAAGCAACTTGGGTTCCACATCTTTTCCGCGTGAGTGTTAGCCAGAACGAGTATAATAACGAGAAGCGGCAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTCGCTGCAGAGTCAAGGATTATGCTGGAAGAAATATCAAAGATGAGAGCATAA 1854 0.4288 MAAKSITPDAVSTLLANPSPDSSSDLSDIVVQVVDLKPSGNRYMFSASDGKKKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVSPALEKEIKSDEPVILLKPKEEVGVKSEGAAGILLKQKQDVVTKSAAQILNEQHRNSAPAARLAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDRFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVADEASFVPETKFSFVQIDQLGPYVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQELLDIVDKSPVVAIKSLRVGDFQGVSLSTISRSVVLVNPDVPEAKKLRSWYEFEGKDAAMDALGSGSSPTSNNGIRSVYSDRVPLSHITSNQSLGDMKPAFFSLKGYISFIKPDQAMWYRACKTCNKKVTESIGSGYWCEGCQKSDEQCSLRYIMVARVCDTSGEAFISVFNDEAEKIVGCSADDLDDLKSQEGEDNPYNLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRIMLEEISKMRA* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02808 617 FunFam Replication protein A subunit 5 115 - -
Phac3g02808 617 PANTHER REPLICATION FACTOR A 1, RFA1 185 578 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phac3g02808 617 SUPERFAMILY Nucleic acid-binding proteins 290 417 IPR012340 -
Phac3g02808 617 NCBIfam replication factor-a protein 1 (rpa1) 7 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phac3g02808 617 Gene3D - 425 615 IPR012340 -
Phac3g02808 617 Pfam Replication protein A OB domain 302 399 IPR031657 -
Phac3g02808 617 Pfam OB-fold nucleic acid binding domain 185 271 IPR004365 GO:0003676
Phac3g02808 617 Pfam Replication factor-A C terminal domain 462 607 IPR013955 -
Phac3g02808 617 CDD RPA1_DBD_A 174 277 - -
Phac3g02808 617 CDD RPA1_DBD_B 307 413 - -
Phac3g02808 617 FunFam Replication protein A subunit 428 615 - -
Phac3g02808 617 Gene3D - 5 118 IPR012340 -
Phac3g02808 617 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
Phac3g02808 617 Gene3D - 285 424 IPR012340 -
Phac3g02808 617 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phac3g02808 617 SUPERFAMILY Nucleic acid-binding proteins 441 615 IPR012340 -
Phac3g02808 617 Gene3D - 171 281 IPR012340 -
Phac3g02808 617 FunFam Replication protein A subunit 284 423 - -
Phac3g02808 617 SUPERFAMILY Nucleic acid-binding proteins 173 282 IPR012340 -
Phac3g02808 617 CDD RPA1_DBD_C 449 614 IPR047192 -
Phac3g02808 617 FunFam Replication protein A subunit 171 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02808 Phac-Chr3 30202944 30206467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02808 5 614 Core DNA Replication Machinery Family AT5G08020 69.722 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02808 K07466 - gmx:100777091 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g02808 3 30202944 30206467 Phac3g02808 3 30202944 30206467 ECH