Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02777 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCTCGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTCGCTCTCCTCGTCTTCTCCCCCAAAGGCAAACTTTTAGACTTCTCCAACCAACCTTCTGTGGAAAGAATTCTTGAACGGTATGAGAGGCATTCGTATGCAGGGAGGCAAGACGGTGCAGGTGATCAAGCACCAAATGAAAACTGGGTTATAGAACAAGAAAGACTGAAGGATAGGGTGGAGGTACTGCAGCAACGTCTAAGGAATTTTATGGGGGAAGAGCTTCATAGCTTAAATCTTAGAGGACTTCAGCGTTTAGAACAACAACTTGATTCTGCCCTCAAACACATTAGATCACGAAAGAACCAAATCATGCATGAATCTATTTCAGAGCTTCAGAAAAAGATTAAAGAAAAAGAGAAGGCACTGGGCCCTGAAGTGCAGGAGAGGTTGCAAAATATCAGGGATGTGACTTCTGTCACTGTAACTAAGCCATTGGAGTCCCTGAATATTGGAGGCTCCCCAAAAGGTACATGTAATGAAGGAACTCCAACGTCAACTCAACCTAAAACCATACTTCCTCCTTGGATGATGACTCGTCCTACAGATGAATAG 681 0.4479 MGRGRVELKRIENKINRQVSFSKRRSGLLKKAREISVLCDADVALLVFSPKGKLLDFSNQPSVERILERYERHSYAGRQDGAGDQAPNENWVIEQERLKDRVEVLQQRLRNFMGEELHSLNLRGLQRLEQQLDSALKHIRSRKNQIMHESISELQKKIKEKEKALGPEVQERLQNIRDVTSVTVTKPLESLNIGGSPKGTCNEGTPTSTQPKTILPPWMMTRPTDE* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02777 226 MobiDBLite consensus disorder prediction 190 226 - -
Phac3g02777 226 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Phac3g02777 226 Coils Coil 88 115 - -
Phac3g02777 226 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac3g02777 226 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Phac3g02777 226 ProSiteProfiles K-box domain profile. 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac3g02777 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Phac3g02777 226 MobiDBLite consensus disorder prediction 190 215 - -
Phac3g02777 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac3g02777 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac3g02777 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac3g02777 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac3g02777 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac3g02777 226 Pfam K-box region 86 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac3g02777 226 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Phac3g02777 226 Coils Coil 125 164 - -
Phac3g02777 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02777 Phac-Chr3 29991671 29997335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02777 1 172 MADS-box Gene Family AT1G26310 59.887 9.06e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac3g02777 K-box 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02777 K09264 K09260 gmx:100798351 327.405