Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02776 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCTCGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTCGCTCTCCTCGTCTTCTCCCCCAAAGGCAAACTTTTAGACTTCTCCAACCAACCTTCTGTGGAAAGAATTCTTGAACGGTATGAGAGGCATTCGTATGCAGGGAGGCAAGACGGTGCAGGTGATCAAGCACCAAATGAAAACTGGGTTATAGAACAAGAAAGACTGAAGGATAGGGTGGAGGTACTGCAGCAACGTCTAAGGAATTTTATGGGGGAAGAGCTTCATAGCTTAAATCTTAGAGGACTTCAGCGTTTAGAACAACAACTTGATTCTGCCCTCAAACACATTAGATCACGAAAGAACCAAATCATGCATGAATCTATTTCAGAGCTTCAGAAAAAGAGGCTCCCCAAAAGGTACATGTAA 495 0.4505 MGRGRVELKRIENKINRQVSFSKRRSGLLKKAREISVLCDADVALLVFSPKGKLLDFSNQPSVERILERYERHSYAGRQDGAGDQAPNENWVIEQERLKDRVEVLQQRLRNFMGEELHSLNLRGLQRLEQQLDSALKHIRSRKNQIMHESISELQKKRLPKRYM* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02776 164 Coils Coil 125 145 - -
Phac3g02776 164 Coils Coil 88 115 - -
Phac3g02776 164 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Phac3g02776 164 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Phac3g02776 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac3g02776 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac3g02776 164 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac3g02776 164 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Phac3g02776 164 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Phac3g02776 164 ProSiteProfiles K-box domain profile. 88 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac3g02776 164 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phac3g02776 164 Pfam K-box region 86 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac3g02776 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac3g02776 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac3g02776 164 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02776 Phac-Chr3 29991671 29997335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02776 1 157 MADS-box Gene Family AT1G26310 63.522 1.41e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac3g02776 K-box 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02776 K09264 - gmx:100798351 256.144