Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02763 ATGGGATCGTCGTCGGCGTCGTTGAGTTCTCCAAAGAAGAGAGTGAGATCCCAAGTAGGGGAGGATGAGGACGAGGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGGGCGAGGGGTTTCCATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTTGTCTGCATCATGGAATGGTCCAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTTTCCAACGTTCGCAGGCTCTCTATGCCCGGCGTCTTTTCTTTCTCTAGGGACGTGAAGGTCCCTCATCGTGACCAGGCCTATCATCCTAATGGAAATGTGGCAATTGGTCCTGTTGATTCTTATGCTGAAACCAAATGTGGTGTTTGTCATGCTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTTACGATTGTGCTATTTCCCGGGAGACCAATGCCAATGAAGAATCAGAACAACAAAATGTTGTGCCAGAGGCTGAACCAAGTGAAACCGTCGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGGTTAAAAGATCAAGGACATCTCCTTTACAACAGAACGTGTTATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGCAGATTCAAAGGAAAAATTCCTGCCACAGGTGTCCATAGTATGCAGCGTAATATACAGGCATTTCGTGAAAACTGGAATGCTTTGAGGAGTGGTTCATTAGGGTTCCATTGTAATGCGGATCAACCTAGCAGTAGAGTTGGTCAAAAGCAAGATTCTAGATCCTTATCACATGGCACATTATATGATTCACATTCTAGGGCTTCCACAAGCGTGCAACAATCCACTGTCCAAGGTGGTCCTACTAACAAAACGTTGAATGAGAGAGTCTATAAAGATGATGCTGACAAGGCTTGGAAAATGGTGGACAGGGCAAAGAAGATGCTACTGATTCGTCAAAGAACTAGCAGCAATCGGCAGGGAGTAGATAGACCCTCATGCAGTGGAGGAGCTTGTAAAACATCAGTTGAACATTGTAATTTCCCAGAACTGAAAGATCAACCTTCGAAAGCATTAGACTTGAGGAACACTAAGAAAGAGAAGCAGTGTGACTATTCTAGACGTGTCCAGAATTTCAAAAATTGCTCGACCCTAAAGTTGGAAGAGAAAATGAAAAATAGGGTTAGATGTGAGGAGATGATACACGGTGTGAGGGACCATACTACTCATTCAGAAGGATATTGTGAAAGTTCATTGTCCAGAAAGGTCCCTACTAATATCCAGGGTGGTGTTCCCTGTGGTGAAGAAGAGAGAAATGCTTGCCAGGGACGTGGATCTTGTCAATGGAGAAAAGATATTAGCTAG 1431 0.4465 MGSSSASLSSPKKRVRSQVGEDEDEEESVCCGICYAGRGVSIAGEIDCCSHYFCFVCIMEWSKHESRCPICRQRFSNVRRLSMPGVFSFSRDVKVPHRDQAYHPNGNVAIGPVDSYAETKCGVCHAGTDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCYDCAISRETNANEESEQQNVVPEAEPSETVDIFDIVRETGSRVVKRSRTSPLQQNVLSPSAIPLSDRLSRFKGKIPATGVHSMQRNIQAFRENWNALRSGSLGFHCNADQPSSRVGQKQDSRSLSHGTLYDSHSRASTSVQQSTVQGGPTNKTLNERVYKDDADKAWKMVDRAKKMLLIRQRTSSNRQGVDRPSCSGGACKTSVEHCNFPELKDQPSKALDLRNTKKEKQCDYSRRVQNFKNCSTLKLEEKMKNRVRCEEMIHGVRDHTTHSEGYCESSLSRKVPTNIQGGVPCGEEERNACQGRGSCQWRKDIS* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02763 476 MobiDBLite consensus disorder prediction 269 314 - -
Phac3g02763 476 SMART PHD_3 120 165 IPR001965 -
Phac3g02763 476 MobiDBLite consensus disorder prediction 1 20 - -
Phac3g02763 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Phac3g02763 476 PANTHER F18C1.6 PROTEIN 20 429 - -
Phac3g02763 476 SMART ring_2 31 71 IPR001841 -
Phac3g02763 476 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Phac3g02763 476 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Phac3g02763 476 MobiDBLite consensus disorder prediction 269 315 - -
Phac3g02763 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 90 IPR013083 -
Phac3g02763 476 SUPERFAMILY FYVE/PHD zinc finger 114 166 IPR011011 -
Phac3g02763 476 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Phac3g02763 476 SUPERFAMILY RING/U-box 20 79 - -
Phac3g02763 476 Pfam PHD-finger 121 165 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02763 Phac-Chr3 29880368 29888192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02763 112 182 C2H2 Transcription Factor Family AT3G01460 36.111 9.11e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac3g02763 PHD 1.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02763 - - gmx:100808541 681.404