Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02667 ATGTCTCATTTCAACTGGGAAGCTGATAAAATGTTAGATTTATATATCTACGATTATCTCATGAAGAGACAATTGCATGCTAGTGCAAGAATATTTCAGGCCGAAGGAAATGTTTCAACGGGTCCTGTTGTTATAGAAGCACCTAGTGGTTTTCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCCGGGCAAATCAGAAGCACACAGAAGCAGCAGCATCCTACAGCAAGAATCAACAAATTAAAGCTCGATTAACACAACAAGAACAAGAGTTTCAGAATATAAACCAGAATCAACAAACACAAATGCAACTCTTGTTGCAAAGACGTGCTCAGCAGCAGCGTCTGGGCGGAACTCAACTTATTAGTGGCAGTGCTAGCTGTCCTATTGATCATTTAATAAGGCAGAACCGGGCAGCTCCTAATGCTATGGCAACAAAATTATATGAGGACAGGTTGAAGCTTCCATGTCAGAGAGATGCTTCAGAAGATGCAAACATTAAGCAGAAGATAGCTGATGACGTTGGTAGGCTTCTAAACCCAAACCATGCAGTATTATTGAAAGCAGCAGGAACATCTGGTGAAATGGCTTCTGGGCAGCCACTGTTCAGTGCTCCTCCTTGCATTTTACCTGGGAATATTCAACATGTTCAAAATCTGAACCAGAAGCTTCTAGGGTCTACACAAGATATGAAGAGTGAGATGAATGCATTGCTGGGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATTGGTTGTCATGGTTCTAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCTGGACTAGATGAACTTCGTTCTGGCATTCTCCAGTCAAATAATTTGATGCACTCTCCACAATCTTTCAATCAACTTTCTCTACGTCAGCAACTTATGCTTCTGGCGGAACAAAATTTGATTTCTCCTCCTGTCAGTGATATCGAGAGCAGAAGACTCGGGATGTTTTTTAATGATCGAAACATGAGTCTTGTGAAAGATGGCCAATCAAATTCTGTAGATGATTTAGTTCTGAGTAATGGATCACCTGCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCTTCAACAATATTCTCAACATCCTCTTGCAAGCCAACCGTGTGAGAATCTCCAGCAGCAAGAAAAAATTGGTTGTGGTCCTGGAAGCATGACTATAGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAAACTAAATTAGTGCGAAAGCGAAAATCAGCATCGTCTTCAGGTCCTGGCGTTAGCTCTGGAACTGCAAACACCACCGGACCACCTGCCAGTTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATAACAGTGTCAACTTTGCAACAGAATGCTCCTTCCTCTAAGTCAGCATTTATGTTTGGTACTGATGGTTTGGGCTCACTTACATCATCACAAAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAATATTGACACATTCATATCTCCTGATGATACAGACATTAGAGAAAAAGTTGGCAAAGGATTCATTTTCAAGGAGATCAAGCATATAAAGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCGTCTGATGGAAAACTTCTTGCTATTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGACAGCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCAACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAAGTTATTCTCTTCGAACATTCACTGGACATGCTACAACTGTGACGTCTCTAGATTTTCACCCTAGCAAAGATGACCTCATTTGCTCATGTGACAGTAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCCGCTGCCGTAGATAATTTCGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATAATGTTGTGCGTTCTGTGTGCTGGGATTCGTCTGGAAAATATTTGGCTTCTCTTAGTGATGATCTGGTTAGAGTATGGACTGTTGGATCTGGCAGCAAAGGGGAATGCATTCACGAGTTTGCTGCATCTGGGAACAAATTCAACACCTGTGTTTTCCATTCCGTCTATCCTTTGTTGGTCATTGGCTGCAATAAGACTATTGAGTTGTGGGACTTCGGTCAGAACAAGACATTGACTTTGCATGCACACGAAAAGGCTGTATCTTCCTTGGCAGTATCAAATGTTACTGGGTTTCTGGCTTCAACTAGTCATGACAAACATTTCAAGATCTGGAAGTGA 2475 0.4214 MSHFNWEADKMLDLYIYDYLMKRQLHASARIFQAEGNVSTGPVVIEAPSGFLLEWWSVFWDIYIARANQKHTEAAASYSKNQQIKARLTQQEQEFQNINQNQQTQMQLLLQRRAQQQRLGGTQLISGSASCPIDHLIRQNRAAPNAMATKLYEDRLKLPCQRDASEDANIKQKIADDVGRLLNPNHAVLLKAAGTSGEMASGQPLFSAPPCILPGNIQHVQNLNQKLLGSTQDMKSEMNALLGSQAVVSEGSFIGCHGSNPGGSNLTLKGWPLAGLDELRSGILQSNNLMHSPQSFNQLSLRQQLMLLAEQNLISPPVSDIESRRLGMFFNDRNMSLVKDGQSNSVDDLVLSNGSPAQVGSPMLPHPDSDVFFKLQQYSQHPLASQPCENLQQQEKIGCGPGSMTIEGNVSNSLQGNDQAPKTKLVRKRKSASSSGPGVSSGTANTTGPPASSPSTPSTQTPGEMITVSTLQQNAPSSKSAFMFGTDGLGSLTSSQNQLADMDHLVGDGCLGDNIDTFISPDDTDIREKVGKGFIFKEIKHIKAGSHKVECCHFSSDGKLLAIGGHDNKVSLWCTELFNQTATLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDIDNPSYSLRTFTGHATTVTSLDFHPSKDDLICSCDSSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDNFVSIFDVETLGCRLKLQGHNNVVRSVCWDSSGKYLASLSDDLVRVWTVGSGSKGECIHEFAASGNKFNTCVFHSVYPLLVIGCNKTIELWDFGQNKTLTLHAHEKAVSSLAVSNVTGFLASTSHDKHFKIWK* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Phac3g02667 824 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Phac3g02667 824 Gene3D - 674 824 IPR015943 GO:0005515
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 573 IPR001680 GO:0005515
Phac3g02667 824 MobiDBLite consensus disorder prediction 433 463 - -
Phac3g02667 824 MobiDBLite consensus disorder prediction 395 463 - -
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 627 668 IPR001680 GO:0005515
Phac3g02667 824 ProSitePatterns Trp-Asp (WD) repeats signature. 603 617 IPR019775 -
Phac3g02667 824 SUPERFAMILY WD40 repeat-like 547 824 IPR036322 GO:0005515
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 740 IPR001680 GO:0005515
Phac3g02667 824 Pfam WD domain, G-beta repeat 580 616 IPR001680 GO:0005515
Phac3g02667 824 Pfam WD domain, G-beta repeat 541 573 IPR001680 GO:0005515
Phac3g02667 824 Pfam WD domain, G-beta repeat 788 824 IPR001680 GO:0005515
Phac3g02667 824 Pfam WD domain, G-beta repeat 624 658 IPR001680 GO:0005515
Phac3g02667 824 Pfam WD domain, G-beta repeat 704 738 IPR001680 GO:0005515
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 627 664 - -
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 792 824 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 785 824 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 620 659 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 535 574 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 701 739 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 745 783 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 662 698 IPR001680 GO:0005515
Phac3g02667 824 SMART WD40_4 577 616 IPR001680 GO:0005515
Phac3g02667 824 Coils Coil 81 105 - -
Phac3g02667 824 PANTHER TRANSCRIPTION ACTIVATOR MSS11 383 824 - -
Phac3g02667 824 Gene3D - 528 673 IPR015943 GO:0005515
Phac3g02667 824 MobiDBLite consensus disorder prediction 395 420 - -
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 625 IPR001680 GO:0005515
Phac3g02667 824 CDD WD40 538 824 - -
Phac3g02667 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 792 824 - -
Phac3g02667 824 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02667 Phac-Chr3 29258011 29270290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02667 621 823 Miscellaneous Gene Families AT5G08390 24.762 2.59e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phac3g02667 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02667 - - vun:114177037 1326.23