LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g02627	ATGTGCAAGCTACCATACCAAAGCCAACTTATGCAATATAAAAACCTCACTTCATCACAAACCCACACACTTTCAAAAACTCTCACACACCTACATGCACCCACCATGAATGCTCCTACCACTGTAACCGCTATCACCACCACACCTCCGAGTAGGGATGAACCCGACTACGACAGCAGCTCCTCCTCCATCACGGTGCCGGAATCCAGCCGGAGCTGGATGACCAACCTCAGCTTCGGCAGTCGGCGCCGCCGGAGCTCGGTCTCTCTGTGCTCCTCCACCCTGGAGAGCCCGCACGCGAGGCCCCACAAGGCGAACCAGGCTGCATGGGAGGTCATGCGGCGGCTCCGGCGGGACAAGGGGCAGGTGGGTCTGGAGCACTTCCGCCTGCTGCGGCGGCTGGGAAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCTGTGGTGGGGTTGCCGCAGTGCTTTTATGCGATGAAGGTGGTGGACCGAGAGGCACTTGCGATAAGGAAGAAGCTGCAGAGGGCGGAGATGGAGAAGGAGATTCTTGCCATGCTTGATCACCCCTTCTTGCCTACTTTGTACACTGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGAGGTGACTTGTACGCTGCACGCCAACGCCAGCCCGGGAAGCGCTTTTCCATTACTTCCACTAAGTTTTATGCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTTGTGAGGGAGGATGGACACATTATGCTTTCAGATTTTGATCTTTCGCTCAAATGTGACGTTGTTCCCAAGCTGTTAAGGAGTAAGACGAGAGTGGAACGCAGTATCAAGAGTACAAAGAGATCCGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAAGAAAAAGAAAGCGACTGTGACAACAGTTATAAGGGAAAATGTTGAGGTGGAAGAGCTTGATCCGGAGCTGGTGGCTGAGCCTATTGATGCCAAATCCAAGTCATTTGTGGGGACACATGAGTACTTGGCACCAGAAGTGATATTGGGGCAAGGACATGGGAGTGCAGTGGACTGGTGGACGTTTGGGGTGTTCTTGTATGAGATGTTATACGGGAGAACACCCTTCAAAGGTGAAAATAATGAGAAAACTCTCGTCAACATTTTGAAGCAACCATTGGCTTTCCCTAGAATTGCAGCTAGCAGCAGCAAGGATTATGAAGAGATGGTGAAAGTTCAAGACCTTATAAGCAAGCTGTTAGTGAAGAATCCAAATAAGAGAATTGGAAGCTGTATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTAAATTGGGCCTTAATTAGATCAGTTAGGCCACCTGAAGTCCCTAATGATATGAACAAAATTAGGAGTAGGGTTTTGCTACCAAAACTAAGCAAAACAGACAGGGATCAGCCATATCAGCTTAGAACTCATCATTTTGAATACTTCTAA	1560	0.4987	MCKLPYQSQLMQYKNLTSSQTHTLSKTLTHLHAPTMNAPTTVTAITTTPPSRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSLCSSTLESPHARPHKANQAAWEVMRRLRRDKGQVGLEHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSTKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRVERSIKSTKRSVPACTAPMQPVLSCFLASSKKKKATVTTVIRENVEVEELDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAASSSKDYEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPNDMNKIRSRVLLPKLSKTDRDQPYQLRTHHFEYF*	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g02627	519	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	254	266	IPR008271	GO:0004672\|GO:0006468
	Phac3g02627	519	CDD	STKc_phototropin_like	127	485	-	-
	Phac3g02627	519	SMART	serkin_6	128	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g02627	519	FunFam	protein kinase PINOID	213	281	-	-
	Phac3g02627	519	Gene3D	Phosphorylase Kinase; domain 1	126	212	-	-
	Phac3g02627	519	PANTHER	FLIPPASE KINASE 1-RELATED	46	489	-	-
	Phac3g02627	519	FunFam	protein kinase PINOID 2	126	212	-	-
	Phac3g02627	519	FunFam	serine/threonine-protein kinase D6PK-like	356	486	-	-
	Phac3g02627	519	Gene3D	Transferase(Phosphotransferase) domain 1	355	486	-	-
	Phac3g02627	519	Pfam	Protein kinase domain	129	283	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g02627	519	Pfam	Protein kinase domain	357	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g02627	519	ProSiteProfiles	Protein kinase domain profile.	128	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g02627	519	MobiDBLite	consensus disorder prediction	33	67	-	-
	Phac3g02627	519	Coils	Coil	161	181	-	-
	Phac3g02627	519	Gene3D	Transferase(Phosphotransferase) domain 1	213	282	-	-
	Phac3g02627	519	SUPERFAMILY	Protein kinase-like (PK-like)	110	491	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g02627	Phac-Chr3	28861416	28863480	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g02627	53	519	AGC Kinase Gene Family	AT2G26700	58.476	0.0	580

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Phac3g02627		Pkinase	1.5e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g02627	K08286		-	gmx:100777988	889.412