Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02621 ATGAGTTTCTCTGACCACATTCCATCCTTTATGATGTCACCACCGTCATTTTCTACAGACACAGATGCCATTGAAGTGAGGCTTCAATTCCCAATGAACAACGAATTGTTGGAGCCACATTCACCACAGGATCAACCCCCTTCTTTTAAGAGGGCAAGGATTGGTGATAACAACCACTCGTATGCAATGGCATGCCCTCCAAGGGTGACTCAGAACCCTGGTTTTAACAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAGTTCAGAATTGGGGCTTGTAGGAACGGTGAGAATTGCAATTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCTCCGAACTGGCAAGAGCTTGTTGGATTGCGCAATGAGGAGCGGCTGCCGTCAGGGAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCGAAGTTCAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCTATAAGCATCGGAACTAATGGATCCCCCAAGGCATATGGTGATCCTTCTAATTATTTAGAGAGTAATAGGGCTGTAAACACTGGCTTGAATGTTTCCCGACCGAATGTTAAGTCCACTTATTGGAAGACTAAACTGTGCATCAAATTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGCTACAATTTCCTGGTGGACGCAATGAGGCAGAAACTGCTGGTGCCATTCCAATTTCAACTAAAGCTACCATTCCAACCTTACCAAGAGCAACACCAGTTTCTTCTAATGATGCACCTCCTAACCACAATGTACCTCCTGCAAATGAAGAGGAGCAGGGTAAGAAGTATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGACGATTTACCACTTGTTCACAACTTGCCAGGCAGAGTGGGAATCTGA 1035 0.4589 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNELLEPHSPQDQPPSFKRARIGDNNHSYAMACPPRVTQNPGFNKGTSHIFFKTRMCAKFRIGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRYRESTAISIGTNGSPKAYGDPSNYLESNRAVNTGLNVSRPNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQFPGGRNEAETAGAIPISTKATIPTLPRATPVSSNDAPPNHNVPPANEEEQGKKYLLKWKGPKKINRIYGDWLDDLPLVHNLPGRVGI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02621 344 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Phac3g02621 344 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Phac3g02621 344 Gene3D - 143 172 - -
Phac3g02621 344 Gene3D - 76 114 - -
Phac3g02621 344 Gene3D - 220 258 - -
Phac3g02621 344 MobiDBLite consensus disorder prediction 286 305 - -
Phac3g02621 344 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Phac3g02621 344 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Phac3g02621 344 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Phac3g02621 344 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Phac3g02621 344 PANTHER CCCH ZINC FINGER/TIS11-RELATED 43 175 IPR045877 GO:0003729
Phac3g02621 344 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Phac3g02621 344 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Phac3g02621 344 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Phac3g02621 344 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Phac3g02621 344 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Phac3g02621 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Phac3g02621 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Phac3g02621 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Phac3g02621 344 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02621 Phac-Chr3 28796339 28799146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02621 228 257 C3H Transcription Factor Family AT1G68200 60.000 5.65e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac3g02621 zf-CCCH 9.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02621 - - gmx:100793865 626.32