Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02601 ATGCCATGGTCTTTTGCTTCCCCTTATGTACCTCCGCATCGCCACTCTAACTACATTCCACCTTCCTCCGACGATCCCGCCCACCACGGATTTCCCCGTGCTGGAGCATGGCCGCGCGGCGGTGCCCGTGGTGCCTCCGGTGGTCGAGGATTCTCTCGCCCCCGGGAGCCTTATCACCGGAACTCCAGCTTCCCCACGGAAGAACCAGAAAACGGCGAGGCTATCAACTTCGACGCGTACGAGTCGGTTCCGGTGGAGGCGAGTGGGATGAACGTGCCTCCGCCGGTGAACGTCTTCGACGACACGGACTTGGACGAAGGGTTGAAGAAGAACATCAAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCTGGCCGTGACCTCATGGCGTGTGCACAGACAGGGTCGGGGAAAACGGCGGCGTTTTGCTTTCCCATCATATCTGGGATTTTGAAGGGTCGTTCCTCTCCTGGGTTTTCGCCTGTGTCTCGTGGGGTTGCTGTTGCATACCCCACTGCACTTATTTTGTCTCCTACGAGGGAGTTGTCTTGCCAGATACGCGATGAGGCGAACAAATTTGCATTTCAAACTGGAGTGAAGGTTGTTGTTGCCTATGGAGGGTCTCCTATCATTCAGCAGCTGCGCCTTTTGGAGAAGGGAGTTGACATATTGGTTGCCACTCCTGGGCGTTTGGTGGATATTATCGAGAGAGAAAGGGTTTCGTTGGCGAGGATAAAGTATCTTGCTTTAGACGAAGCTGATCGTATGCTGGACATGGGTTTTGAGCGTCAAATACGCAAGATTGTGGAGGAAATGCACATGCCACCGCCAGGTATTAGGCAGACATTGTTGTTTAGTGCAACCTTCCCTAACGATATACAGAAGCTAGCTTCGGACTTTTTGTTGGACTACATATTCCTGTCTGTTGGGAGAGTTGGATCTAGTACTGAATTGATTGTGCAGAAGATTGAGCTTGTACATGATACAGACAAAAGAGACAAACTTGTTGATCATCTTCGTCGTCAAAAGGTGCATGGGACCAATGGGAAGCATGCTTTAACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTAGAAAACTGGTTAGTGAAAAGTGGCTTTCCCGCTATTGCTATACACGGAGACAAAGTTCAATTGGAAAGGGAACGGGCTTTAAGATCTTTTAAATCTGGAAATACTCCTATTTTGGTTGCAACTGACGTTGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCTAGAGACATAGATGACTATGTACATAGAATTGGACGAACAGGCCGTGCAGGCAAAACTGGTTTAGCCACTGCTTTCTTCAGCGACAAGAACAGTCCAATGGCAAAGTCTCTTGTTGGACTCTTACAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCATCCAGTTTGCAGAGGGTTCCTCATCGAGTAGCCGTGGTTATGGATCACAGCGTTACAGCAGTGGTAGCTATGGCGGTGGATCACAGCGTTACAGCAGTGGTAGCTATGGAGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTGCAGAGGTACGACAGTGGTAGCTATGGCGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTCCAGAGCTACAACAGTGGTAGCTATGGCGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTCCAGAGCTACAACTGCTACGGTTCTCATGGCAATGCGGATCATGGTGTAGAGTCTGTTTGTACAACCTCACACGTTGATACCTCGTACGACATGCAAAACTCCCTTATAGAAACCTCTTTTGACAGTTTGAATATAAACTGCAGTTATGATCAAACTGATGTCAAATCTGGTGAATTGTGTGGAGGTGAGAAGGTTGGTGAAGATGGTCCTAGTGGTTATGAATCTATTGTTCCCACTGGATGGGACTAG 1992 0.4915 MPWSFASPYVPPHRHSNYIPPSSDDPAHHGFPRAGAWPRGGARGASGGRGFSRPREPYHRNSSFPTEEPENGEAINFDAYESVPVEASGMNVPPPVNVFDDTDLDEGLKKNIKRCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSPGFSPVSRGVAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGSPIIQQLRLLEKGVDILVATPGRLVDIIERERVSLARIKYLALDEADRMLDMGFERQIRKIVEEMHMPPPGIRQTLLFSATFPNDIQKLASDFLLDYIFLSVGRVGSSTELIVQKIELVHDTDKRDKLVDHLRRQKVHGTNGKHALTLVFVETKRGADALENWLVKSGFPAIAIHGDKVQLERERALRSFKSGNTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKTGLATAFFSDKNSPMAKSLVGLLQEANQEVPSWLIQFAEGSSSSSRGYGSQRYSSGSYGGGSQRYSSGSYGGRDFRNPTEPEVQRYDSGSYGGRDFRNPTEPEVQSYNSGSYGGRDFRNPTEPEVQSYNCYGSHGNADHGVESVCTTSHVDTSYDMQNSLIETSFDSLNINCSYDQTDVKSGELCGGEKVGEDGPSGYESIVPTGWD* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02601 663 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 316 IPR014001 -
Phac3g02601 663 FunFam Probable ATP-dependent RNA helicase DDX4 61 318 - -
Phac3g02601 663 CDD DEADc_DDX3_DDX4 99 322 IPR044763 GO:0003724|GO:0005524
Phac3g02601 663 FunFam ATP-dependent RNA helicase RhlB 319 498 - -
Phac3g02601 663 MobiDBLite consensus disorder prediction 1 73 - -
Phac3g02601 663 Gene3D - 319 497 IPR027417 -
Phac3g02601 663 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 494 IPR001650 -
Phac3g02601 663 Pfam Helicase conserved C-terminal domain 358 455 IPR001650 -
Phac3g02601 663 CDD SF2_C_DEAD 328 464 - -
Phac3g02601 663 MobiDBLite consensus disorder prediction 642 663 - -
Phac3g02601 663 MobiDBLite consensus disorder prediction 496 570 - -
Phac3g02601 663 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 494 - -
Phac3g02601 663 Gene3D - 55 318 IPR027417 -
Phac3g02601 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 471 IPR027417 -
Phac3g02601 663 MobiDBLite consensus disorder prediction 496 529 - -
Phac3g02601 663 SMART ultradead3 116 331 IPR014001 -
Phac3g02601 663 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Phac3g02601 663 SMART helicmild6 374 455 IPR001650 -
Phac3g02601 663 Pfam DEAD/DEAH box helicase 121 305 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02601 Phac-Chr3 28706845 28710102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02601 95 475 Eukaryotic Initiation Factors Gene Family AT3G19760 31.937 3.90e-56 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02601 K11594 - gmx:100791226 871.692