Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02562 ATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTGCACCCACCACTAATGTATCTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCGTTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCCCATATTCACTTTGGGCTGATGCTGGACAGCAACAACCAAGCTAAGATGGAAAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTAATGAATAAATGA 405 0.4667 MAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTNVSEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLMSRAALMNK* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02562 134 PANTHER PROTEIN YABBY 6-RELATED 23 117 IPR006780 GO:0007275
Phac3g02562 134 FunFam Axial regulator YABBY 52 124 - -
Phac3g02562 134 SUPERFAMILY HMG-box 51 100 IPR036910 -
Phac3g02562 134 Gene3D High mobility group box domain 45 128 IPR036910 -
Phac3g02562 134 CDD HMG-box_SF 61 97 - -
Phac3g02562 134 Pfam YABBY protein 26 107 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02562 Phac-Chr3 28377836 28381830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02562 1 117 C2C2-YABBY Transcription Factor Family AT2G26580 70.940 1.22e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phac3g02562 YABBY 3e-41 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02562 K25796 - gmx:100804731 268.085