Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02561 ATGCTGAAAAGGAAGCTACCACTACTATGCGTTTGTGTGTGTTTGCGCTTTTATGAACCAGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTGCACCCACCACTAATGTATCTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCGTTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCCCATATTCACTTTGGGCTGATGCTGGACAGCAACAACCAAGCTAAGATGGAAAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTAATGAATAAATGA 543 0.4715 MLKRKLPLLCVCVCLRFYEPVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTNVSEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLMSRAALMNK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02561 180 CDD HMG-box_SF 107 143 - -
Phac3g02561 180 FunFam Axial regulator YABBY 98 170 - -
Phac3g02561 180 Gene3D High mobility group box domain 91 172 IPR036910 -
Phac3g02561 180 Pfam YABBY protein 21 153 IPR006780 GO:0007275
Phac3g02561 180 PANTHER PROTEIN YABBY 6-RELATED 21 163 IPR006780 GO:0007275
Phac3g02561 180 SUPERFAMILY HMG-box 97 146 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02561 Phac-Chr3 28377836 28381830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02561 21 163 C2C2-YABBY Transcription Factor Family AT2G26580 75.524 9.24e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phac3g02561 YABBY 1.1e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02561 K25796 - gmx:100804731 324.324