Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02506 ATGGTGCATACAGGTGCATGTGTAGCAGCATTGTTAGGTCAGGGTGGGTCGAAGAGATACAGGTTAACGTGGAAATGGTTACAGTTTTTTAAGAATGACCGGGATCGGAGAGATCTAATAACATGTGGATCAGCGGCTGGAATGGCTGCTGCCTTCCGGGCCCCTGTTGGTGGTGTGTTGTTTGCTCTAGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTCTTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATTTAATTTGCTGTTGAGCAAAGTTCTCCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATCTCCATTTTTACATCCTGCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGTCCACCTAATCCAACTGAACCTTGTCCTACCATAGGCCGGTCTGGTATCTACAAGAAGTTCCAATGCCCTCCTAATCAATACAATGATCTTGCAAGCCTTATTTTCAACACAAATGATGATGCTATTAGGAATCTATTTAGCAAGAATACCAATGACGAGTTTGAGTTTACATCAATGTTAATCTTTTTCATTACATGCTTTCTTCTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGTGTTGTTGGAATGCTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTTTGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTAACCAACAACCTGTTATTGCTGCCCCTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGGAAATATATATGACATTATAATGAAAGCGAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTGGGTGATGTAGTAACAGGCCCACTGCAGACATTTAATGGCACCGAAAAGGTTCGTAACATAGTGTTTATTCTCAAAACTACAGGACATAACGGTTTTCCTGTTATTGACGAGCCTCCTGTGTCGGAAGCTCCGGTGTTATTCGGCATAATCCTTCGTGACCATCTTCTCACGTTGTTGAAGAATAAAGTTTTTATATCCTCACCTTCGGCAACCACTGGCGATGTCCTCAACAAGTTTTCAGCCGATGATTTTGCAAAGAAGGGTTCAAGCAAAGTTCGTCTAAAGATAGAAGATATACAGTTATTGGAGGAAGAGATGGACATGTTCATAGATCTTCATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCCCTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCGCCTGTGGTTGGTATACTCACTCGGCACGATTTCATGCCAGAACATATTTTGGGTTTGCATCCCTTTCTGGCAAGAAACACAGGGAAAATATTAAGATTTTAG 1716 0.4143 MVHTGACVAALLGQGGSKRYRLTWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGILGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWFTSCRPCPPNPTEPCPTIGRSGIYKKFQCPPNQYNDLASLIFNTNDDAIRNLFSKNTNDEFEFTSMLIFFITCFLLSIFSYGVVAPAGLFVPVIVTGASYGRVVGMLLGKNSNLNHGLFAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNGNIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGTEKVRNIVFILKTTGHNGFPVIDEPPVSEAPVLFGIILRDHLLTLLKNKVFISSPSATTGDVLNKFSADDFAKKGSSKVRLKIEDIQLLEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVIPKISSRSPVVGILTRHDFMPEHILGLHPFLARNTGKILRF* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02506 571 CDD CBS_pair_voltage-gated_CLC_euk_bac 374 552 - -
Phac3g02506 571 SMART cbs_1 503 554 IPR000644 -
Phac3g02506 571 SMART cbs_1 391 444 IPR000644 -
Phac3g02506 571 SUPERFAMILY CBS-domain pair 374 550 IPR046342 -
Phac3g02506 571 PRINTS Chloride channel signature 45 64 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phac3g02506 571 PRINTS Chloride channel signature 358 372 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phac3g02506 571 PRINTS Chloride channel signature 320 339 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phac3g02506 571 PRINTS Chloride channel signature 270 290 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phac3g02506 571 PRINTS Chloride channel signature 302 318 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phac3g02506 571 Gene3D Clc chloride channel 1 371 - -
Phac3g02506 571 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 556 - -
Phac3g02506 571 Pfam CBS domain 503 549 IPR000644 -
Phac3g02506 571 Pfam CBS domain 384 444 IPR000644 -
Phac3g02506 571 Pfam Voltage gated chloride channel 1 352 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Phac3g02506 571 ProSiteProfiles CBS domain profile. 499 560 IPR000644 -
Phac3g02506 571 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phac3g02506 571 PRINTS Plant CLC chloride channel signature 80 90 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phac3g02506 571 PRINTS Plant CLC chloride channel signature 222 238 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phac3g02506 571 PRINTS Plant CLC chloride channel signature 98 105 IPR002251 GO:0005247|GO:0006821|GO:0016020
Phac3g02506 571 Gene3D - 372 552 IPR046342 -
Phac3g02506 571 SUPERFAMILY Clc chloride channel 1 373 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02506 Phac-Chr3 27745899 27752506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02506 1 570 Ion Channels AT5G33280 75.789 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02506 K05016 - gmx:100817901 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g02506 3 27745899 27752506 Phac3g02506 3 27745899 27752506 ECH