Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02455 ATGGGAAGTAATGGTACTGAAAAGATCCCAATCAATAACAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCGGTCCCTGCCCTGAAAGAGCAGATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTTCTGTCTGCGTATCATGTGGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTCAGTCACAGTAGTCAAGTAGCTCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGTGTTGCACCTGAAATCAATAGGATCGTTTCTGCTGTTCTAGGATCCATTGGACTTCAAAATTTTGCAAGTGGTGAAGGGATTGACGTCAGGGAGCATGATTCCCAAGGCCCTGGAAGAATTTCAGGCTCTAGTGGGATATTTGATTCGTCTCATCCTCAACCCGAACAATCGGGTTTTCGGATTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGTGCCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATATTGCCCAAGCAGCTGAGGCTCACAGGAATGTAGAAACTAGACCTGTTTCTTCACGATCTGGTTCAGCTCCAGAAGGGTTTTCATCTCCAACGTTGCTGGCAGAAGTTTTACTTTCCACAAGACGAATGATTGTTGAACAAGCTGGCGAATGCCTACTGCAACTATCACGGCAGCTAGAGAACCAAGCAGATATAACTGATCCATTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACACCGTCTGAAGCGGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAAGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGACATACAGATACGACGAGGTACCTCATCAACATCATCCAATACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCTGGCAAGCTCTAGGCGTTCAGATGCATCTTTTGCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCTGCAGTACCAGGTCCGGTGGTCCGCCCACCCTCGGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAACATAATGCTGCGGTACCATCAACTACTGAATCCATGTTGGAAAGGCAAACCACAGATGATTCTACAAGGAATGGATCCTTATCAACTCCGAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTTGCTGCTAGTGGACCCCAAAACAACCAAGAACCTGAGCGACAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCACGTGGAAGATTCAAGTGTACAAGGAATAGCTGCTGGCTCTACCTCAGATCATGCTGCAACATCAAGGGATGCTGCCCAAGTCCCTGAAGCACAACCTAATGTCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCAGAGGAGGGAAATCCTTCAGAAGATCACATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGATGTTGGGACATCACGCAGACCGGGTGATTCTGACTCAAGCCCACCAAATCCAAAACGTCAAAAGATGGAATGA 2154 0.4466 MGSNGTEKIPINNSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHSVTEPNSSSSLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGPGRISGSSGIFDSSHPQPEQSGFRILSDRSRNAFGAPVPVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGDIAQAAEAHRNVETRPVSSRSGSAPEGFSSPTLLAEVLLSTRRMIVEQAGECLLQLSRQLENQADITDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSNSSLSSGLGSSFFPRRIDIQIRRGTSSTSSNTNQEERNDTQPASVQRNPGENPVNLASSRRSDASFAGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSIGLYYPILGRFQHVSSGHVNSEQRSQHSSQHNAAVPSTTESMLERQTTDDSTRNGSLSTPSTRPEPSNSRVVNINILAASGPQNNQEPERQIPSSVLQLLRSLFPGGEIHVEDSSVQGIAAGSTSDHAATSRDAAQVPEAQPNVSEEGIFLSNMLREIMPVISQQVGSEEGNPSEDHMAQDSSTQVETDVGTSRRPGDSDSSPPNPKRQKME* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02455 717 MobiDBLite consensus disorder prediction 625 649 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 670 709 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 260 280 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 666 717 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 427 467 - -
Phac3g02455 717 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Phac3g02455 717 MobiDBLite consensus disorder prediction 427 472 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 106 120 - -
Phac3g02455 717 Coils Coil 712 717 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 177 203 - -
Phac3g02455 717 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Phac3g02455 717 SMART ubq_7 22 93 IPR000626 GO:0005515
Phac3g02455 717 Gene3D - 14 109 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 168 204 - -
Phac3g02455 717 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 716 - -
Phac3g02455 717 SUPERFAMILY Ubiquitin-like 17 102 IPR029071 -
Phac3g02455 717 MobiDBLite consensus disorder prediction 522 575 - -
Phac3g02455 717 PRINTS Ubiquitin signature 32 52 IPR019956 -
Phac3g02455 717 PRINTS Ubiquitin signature 53 73 IPR019956 -
Phac3g02455 717 PRINTS Ubiquitin signature 74 95 IPR019956 -
Phac3g02455 717 FunFam Large proline-rich protein BAG6 14 107 - -
Phac3g02455 717 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02455 Phac-Chr3 27390673 27402450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02455 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 7.57e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02455 K23390 - gmx:100783070 1153.27