Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02454 ATGGGAAGTAATGGTACTGAAAAGATCCCAATCAATAACAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCGGTCCCTGCCCTGAAAGAGCAGATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTTCTGTCTGCGTATCATGTGGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTCAGTCACAGTAGTCAAGTAGCTCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGTGTTGCACCTGAAATCAATAGGATCGTTTCTGCTGTTCTAGGATCCATTGGACTTCAAAATTTTGCAAGTGGTGAAGGGATTGACGTCAGGGAGCATGATTCCCAAGGCCCTGGAAGAATTTCAGGCTCTAGTGGGATATTTGATTCGTCTCATCCTCAACCCGAACAATCGGGTTTTCGGATTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGTGCCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATATTGCCCAAGCAGCTGAGGCTCACAGGAATGTAGAAACTAGACCTGTTTCTTCACGATCTGGTTCAGCTCCAGAAGGGTTTTCATCTCCAACGTTGCTGGCAGAAGTTTTACTTTCCACAAGACGAATGATTGTTGAACAAGCTGGCGAATGCCTACTGCAACTATCACGGCAGCTAGAGAACCAAGCAGATATAACTGATCCATTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACACCGTCTGAAGCGGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAAGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGACATACAGATACGACGAGGTACCTCATCAACATCATCCAATACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCTGGCAAGCTCTAGGCGTTCAGATGCATCTTTTGCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCTGCAGTACCAGGTCCGGTGGTCCGCCCACCCTCGGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAACATAATGCTGCGGTACCATCAACTACTGAATCCATGTTGGAAAGGCAAACCACAGATGATTCTACAAGGAATGTAGGATCCTTATCAACTCCGAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTTGCTGCTAGTGGACCCCAAAACAACCAAGAACCTGAGCGACAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCACGTGGAAGATTCAAGTGTACAAGGAATAGCTGCTGGCTCTACCTCAGATCATGCTGCAACATCAAGGGATGCTGCCCAAGTCCCTGAAGCACAACCTAATGTCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCAGAGGAGGGAAATCCTTCAGAAGATCACATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGATGTTGGGACATCACGCAGACCGGGTGATTCTGACTCAAGCCCACCAAATCCAAAACGTCAAAAGATGGAATGA 2157 0.4465 MGSNGTEKIPINNSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHSVTEPNSSSSLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGPGRISGSSGIFDSSHPQPEQSGFRILSDRSRNAFGAPVPVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGDIAQAAEAHRNVETRPVSSRSGSAPEGFSSPTLLAEVLLSTRRMIVEQAGECLLQLSRQLENQADITDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSNSSLSSGLGSSFFPRRIDIQIRRGTSSTSSNTNQEERNDTQPASVQRNPGENPVNLASSRRSDASFAGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSIGLYYPILGRFQHVSSGHVNSEQRSQHSSQHNAAVPSTTESMLERQTTDDSTRNVGSLSTPSTRPEPSNSRVVNINILAASGPQNNQEPERQIPSSVLQLLRSLFPGGEIHVEDSSVQGIAAGSTSDHAATSRDAAQVPEAQPNVSEEGIFLSNMLREIMPVISQQVGSEEGNPSEDHMAQDSSTQVETDVGTSRRPGDSDSSPPNPKRQKME* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02454 718 MobiDBLite consensus disorder prediction 522 574 - -
Phac3g02454 718 PRINTS Ubiquitin signature 32 52 IPR019956 -
Phac3g02454 718 PRINTS Ubiquitin signature 74 95 IPR019956 -
Phac3g02454 718 PRINTS Ubiquitin signature 53 73 IPR019956 -
Phac3g02454 718 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 717 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 260 280 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 427 467 - -
Phac3g02454 718 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Phac3g02454 718 MobiDBLite consensus disorder prediction 427 472 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 671 710 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 106 120 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 177 203 - -
Phac3g02454 718 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Phac3g02454 718 SMART ubq_7 22 93 IPR000626 GO:0005515
Phac3g02454 718 MobiDBLite consensus disorder prediction 667 718 - -
Phac3g02454 718 Gene3D - 14 109 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 168 204 - -
Phac3g02454 718 SUPERFAMILY Ubiquitin-like 17 102 IPR029071 -
Phac3g02454 718 MobiDBLite consensus disorder prediction 626 650 - -
Phac3g02454 718 FunFam Large proline-rich protein BAG6 14 107 - -
Phac3g02454 718 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02454 Phac-Chr3 27390673 27402450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02454 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 7.58e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02454 K23390 - gmx:100783070 1148.65