Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02429 ATGTCGGACGAAGAGTCCTCCGCAGACAACCAACCTTCAATGGACCCTTCTTTAAGCCTCTCCGATCAGTCACTGTCCCTCAGTCTTTCCCAAGTTAAACTTCATGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTACCAGTTGGAGTTGTGTAAAAAAGCTATGGAGGAAAATATAATTGTATATTTGGGGACAGGGTGTGGGAAGACTCACATCTCTGTGCTTCTAATGCATGAGTTAGGTTATTTGATTCGGAAACCACAAAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCGGACACTACTGATTTTAAGGTTGGAATCTTCTGTGGAAGTTCCAAACGCTTGAAAAGTCATAAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCTCAAATATTACTTCACAACTTATCTCATTGTTTCATCACGATGGAAGTGATTGCACTTTTGATATTTGACGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAAGTTTCTACAAAAGTAATTCTGCAAAGGTTCCTCGTATATTTGGCATGACCGCTTCCCCTGTTGTAGGAAAAGGTAATATGACAATTCTTAACTTCAAAAGGTTGAGTGCTAACAAGAGCCAAGATATTTCCCTGTCTCAATTACCTTTCAATATTGTTGAATTACAGGATTTAGGGGCTTCTTGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACACATGCTTGATGCTAAGGTTTACTCTGTTGAAGTCAAGGAATTGGAATCTTTTGTTACCACTCCTGTGATTAATATATATCGTTATGCTTCAACTGCAAATGGGGAAACTAGCTTGTACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCATTGGAAGGAGTGCAGAAGATCACCAGAAACGAATGAATACTAAGAAACTTTTGAACCGAATGCATGATAATGTAATTTTCTGTCTACGGAATCTTGGCATTTGGGGAGCACTACAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGTAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACAATTATCTTGCTCAGGCTGCTGAACTATTTACTTCAGGCGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTGTCCAACTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTTCAGAAGCTCCAGCTTCTAAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACGTGTTGCCTTGTGATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCGCGAATGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTGGTAATAAGAAGGAGCTTGATTTAATTGATGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAATTACTTTCCGAACATCTGATGAGACATACATCATCCCTGAGGAAAGAATTTTCAGAGTTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGAGCCCAAGCCAAATTTTTATTTCTTAGATGATTCAGAGGGAATTGTTTGCCATATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAAAATAGGTGCTTTAAGTGATTATCTCTTGCCAAAACAAGGTGATGCAGAACCGGAAGGACAGGTTTCTACTGATGAAGATGAATGTGAAGAAAGAGGAGAATTACATGAGATGCTAGTTCCATCTGCCTTTGGACAGTCATGGATAAATGAGGATAAAGTTGTCCTTCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGACGATCTGTAATGACAAAATTTGTCCGATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTAGTCTGGATAGATTTGAATTTGTTTCTGAGATTGTAAACTTGGGCATGGCTGCTGAATCTCACACAAGCTCATCGACCTTCTACCTTTTGCTTCCAGTCATATTTCAAGAATATGGAAATGTTATGAAAGTAGATTGGAAGACAGTGAAGAGATGTCTTTGGTCACCAATTTTCAGGCATCCAGAATATACTATGGATAAAAAAAAATTCCCTTTGGATATTCACTTGCAACTTGCCAATGGTTACGAAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCAACATAAAAAGACCTTTTATTTTGTGACAAATATTGATTATGGAAAGACTGGATTTAGTCCTCATAAAGAATCAGGCTCTTTAAGCTATGAGGATTACTTAATTGAAGGGTTTTCGATTCACCTCAAATACCCGGAACAACCGCTTCTGCATGTAAAACCACTCCCCAATTTGCATAACCTGCTACACAACCGAAAGCGTGAGGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCTGAGCTATGTGAATTGAAAATAATCAGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCCTCAATTATGCATCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCACATGCTATCTTCTTCTTTTCCCGAGGCAGCTGAAGTTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTCAAATTTGTTGTTGCACGCCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTAACAAAGAGGCGATCCAATGCTGTAAATAATTCCAATTTATTAAAGTTGGCCATTAGGCGCAATTTGCAGATCTACATATGTGATCAGACATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAATAATTTGTTGTAAAGAAGTCGAAGAAAGCATACACTTTTGCGTAAATTCTGTGAAGGAGCAAAGAAAATTAACTGAAACCCGATGTAACAAAAATCATCATTGGTTACATAATAAAACAGTTGCTGATGTTGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGTTTTAAAGCCGCAATTGCTTTTCTTACTTGGATTGGCATACAAGTTGATTTTAAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTTCTGCCTATATCCCTCTTTCTGCTGATGTAGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTTCACAAGGGTCTGCTTCTCCAGGCATTTGTGCATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCCTGTGTAGCTGTAGATCGCAGTTTTGATAAATATCTTTTATGTGATTCAAATGGCTTGTCCGAGGCAATAAAAAAGTATGTAGAGTACGTTAGAAGACCTTCAACAGATAGTGCCATTAAAGAAGGGCCAAAATGTCCCAAGGAAAGCCTGGGAGTCATTTTATTGCTCAATGGAGATAAGATGGGTTTAGTTAAGGTCATGGGTAACTCTTCTAGGAACATTAGGGCACTGGGTGACTTGGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATTCTGGGTTCAATTTGAACAAAGTTTGGAAAATCATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTACGAGAACTTTGCCAAGCTCATAATTTGGTGTTGGAGCTTCCATCAGTGTCATCAAAACTGACTAAACTGTTTTCAGTTGAAGTCAAAGTGAGTGGGGATAATGTATCTGAAACAGCTTCAGCGACTGGCCAAAATAAGAAGGAGGCTTGTAGAATTGCTTCACTGAAACTTCTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTCACAGATACCAATACTGCCAAGCATATAATGGTAACTGCAGACTTGTACAGCAAGTCAAACCCAGAAATTCTCATCCAAGATACAGTTGAAATATGTTCTCCATGTGTGAAACCTGTTGGCCAACGGCTTCAATCTTCTACGAGGGGAAACCTCAGTGAAATATTTGAAAATCATTGCGGCAATGACTCATCAGGGGCAGGAACGGCAAGATCACGACTGTATGAATTGTGTGCTTCTTATTGTTGGAAACCCCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGATCACCTCAAACAATTCACATGCAAGGTGACCTTGGAGATAGAAGAGGCCCTTTATACGATTTTAGAGTTTGTTGGGGAACCTCGGTCAAAAAAGAAAGATGCTGCAGAGAGTGCGGCTGAGGGTGCATTTTGGTACCTGCAACAGGAAGGCTACTTGCGTACTGGTTGTTGA 5061 0.3968 MSDEESSADNQPSMDPSLSLSDQSLSLSLSQVKLHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHISVLLMHELGYLIRKPQKNICVFLAPTVALVHQQAKVIADTTDFKVGIFCGSSKRLKSHKDWEQEIGQYEVLVMTPQILLHNLSHCFITMEVIALLIFDECHHAQVKSNHAYAVIMKSFYKSNSAKVPRIFGMTASPVVGKGNMTILNFKRLSANKSQDISLSQLPFNIVELQDLGASCEANLAKSINSLEHMLDAKVYSVEVKELESFVTTPVINIYRYASTANGETSLYLKIEEIKRQCIATIGRSAEDHQKRMNTKKLLNRMHDNVIFCLRNLGIWGALQASHILLSGDRSERHELVEVEGNSSDDSVCDNYLAQAAELFTSGDNVSDDLSSSEILKEPFFSAKLLRLFGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLQLLRQWRSDYLVGVHSGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDLIDGFEKDEYRMNMEITFRTSDETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFEPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKIGALSDYLLPKQGDAEPEGQVSTDEDECEERGELHEMLVPSAFGQSWINEDKVVLLNSYYIKFCPCPEDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFVRFGVVEFDKDEIKMAENFQEMFLKISLDRFEFVSEIVNLGMAAESHTSSSTFYLLLPVIFQEYGNVMKVDWKTVKRCLWSPIFRHPEYTMDKKKFPLDIHLQLANGYESVRDVENSLVYAQHKKTFYFVTNIDYGKTGFSPHKESGSLSYEDYLIEGFSIHLKYPEQPLLHVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIISFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSSFPEAAEVSALRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSLHEGDLTKRRSNAVNNSNLLKLAIRRNLQIYICDQTFDPSQFYALGRPCPIICCKEVEESIHFCVNSVKEQRKLTETRCNKNHHWLHNKTVADVVEALVGAFLVDSGFKAAIAFLTWIGIQVDFKASQVVDICIASSAYIPLSADVDIPSLESKLGHQFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKYLLCDSNGLSEAIKKYVEYVRRPSTDSAIKEGPKCPKESLGVILLLNGDKMGLVKVMGNSSRNIRALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLVLELPSVSSKLTKLFSVEVKVSGDNVSETASATGQNKKEACRIASLKLLSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIMVTADLYSKSNPEILIQDTVEICSPCVKPVGQRLQSSTRGNLSEIFENHCGNDSSGAGTARSRLYELCASYCWKPPSFECCKEEGPDHLKQFTCKVTLEIEEALYTILEFVGEPRSKKKDAAESAAEGAFWYLQQEGYLRTGC* 1687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02429 1686 Pfam Ribonuclease III domain 1268 1405 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 Pfam Ribonuclease III domain 1061 1192 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 SUPERFAMILY dsRNA-binding domain-like 1389 1498 - -
Phac3g02429 1686 CDD DSRM_DCL_plant 1609 1678 - -
Phac3g02429 1686 Pfam PAZ domain 896 1017 IPR003100 GO:0005515
Phac3g02429 1686 CDD RIBOc 1046 1202 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 SMART DRBM_3 1433 1499 IPR014720 -
Phac3g02429 1686 SMART DRBM_3 1603 1677 IPR014720 -
Phac3g02429 1686 Pfam Helicase conserved C-terminal domain 434 540 IPR001650 -
Phac3g02429 1686 SMART helicmild6 452 542 IPR001650 -
Phac3g02429 1686 SMART ultradead3 43 245 IPR014001 -
Phac3g02429 1686 SUPERFAMILY dsRNA-binding domain-like 1602 1682 - -
Phac3g02429 1686 Gene3D Dicer dimerisation domain 602 696 IPR038248 -
Phac3g02429 1686 FunFam Endoribonuclease dicer-like 1 1228 1426 - -
Phac3g02429 1686 CDD RIBOc 1249 1427 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 ProSiteProfiles Ribonuclease III family domain profile. 1047 1192 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 FunFam Endoribonuclease dicer-like 1 413 576 - -
Phac3g02429 1686 SUPERFAMILY RNase III domain-like 1045 1206 IPR036389 GO:0004525|GO:0006396
Phac3g02429 1686 Gene3D Ribonuclease III domain 1041 1203 IPR036389 GO:0004525|GO:0006396
Phac3g02429 1686 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1602 1678 IPR014720 -
Phac3g02429 1686 ProSitePatterns Ribonuclease III family signature. 1268 1276 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1432 1500 IPR014720 -
Phac3g02429 1686 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 606 696 IPR005034 GO:0016891
Phac3g02429 1686 Gene3D - 1609 1678 - -
Phac3g02429 1686 ProSiteProfiles Ribonuclease III family domain profile. 1233 1405 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 Pfam Type III restriction enzyme, res subunit 55 212 IPR006935 GO:0003677|GO:0005524|GO:0016787
Phac3g02429 1686 Gene3D Ribonuclease III domain 1231 1429 IPR036389 GO:0004525|GO:0006396
Phac3g02429 1686 SMART PAZ_2_a_3 872 1022 IPR003100 GO:0005515
Phac3g02429 1686 Pfam Double-stranded RNA binding motif 1433 1496 IPR014720 -
Phac3g02429 1686 Pfam Dicer dimerisation domain 606 690 - -
Phac3g02429 1686 SUPERFAMILY PAZ domain 895 994 IPR036085 GO:0005515
Phac3g02429 1686 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 230 IPR014001 -
Phac3g02429 1686 Gene3D - 47 314 IPR027417 -
Phac3g02429 1686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 556 IPR027417 -
Phac3g02429 1686 CDD DSRM_EIF2AK2-like 1431 1498 - -
Phac3g02429 1686 CDD DEXHc_dicer 45 222 - -
Phac3g02429 1686 SUPERFAMILY RNase III domain-like 1232 1424 IPR036389 GO:0004525|GO:0006396
Phac3g02429 1686 MobiDBLite consensus disorder prediction 1 21 - -
Phac3g02429 1686 Gene3D - 415 576 IPR027417 -
Phac3g02429 1686 Gene3D - 1430 1509 - -
Phac3g02429 1686 ProSiteProfiles PAZ domain profile. 896 996 IPR003100 GO:0005515
Phac3g02429 1686 Gene3D paz domain 891 994 - -
Phac3g02429 1686 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 422 585 IPR001650 -
Phac3g02429 1686 PANTHER DICER-RELATED 60 1503 - -
Phac3g02429 1686 SMART riboneu5 1045 1212 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 SMART riboneu5 1248 1428 IPR000999 GO:0004525|GO:0006396
Phac3g02429 1686 FunFam Endoribonuclease dicer-like 1 601 697 - -
Phac3g02429 1686 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1603 1677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02429 Phac-Chr3 27170534 27187317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02429 440 539 Eukaryotic Initiation Factors Gene Family AT1G72730 32.000 2.85e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02429 K11592 - gmx:100818702 2748.77