Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02349 ATGCACATATTAGGTGCACACACCAAAACCTGCAAGCCTCAGTTTTCCTTCATAAAACATAAATTTTCCTCTCAACTTCACCCACTCACTATTGTTGTGTTGTGTCACATTGTTGTCCATTCAGTCACCACTACCAACATGGAAGCCAGTGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGCGAGATATGTGGCGATGATGTGGGAGTCACGGTGGATGGAGACATGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGCATGCCGACCTTGCTATGAGTATGAACGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAAACCAGATACAAGCGTCTTAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAACATGAATTCAACATTGATGACCAAATGAACAAGCATAATCACTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGTACTGAAGATGATGAGAATTCTCACTTCCCAGCTGTTATTGCCGGTGGTCGTTCTCGGCCTGTTAGTGGAGAGTTGCCAATATCATCTCATTATGGGGAGCACGCTTCACTGCATAATCGTGTGCACCCATATCTGGCATCTGATCCTAGAAATGGAAAATGGGATGAAAACAAAGAGGATAGAATGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCGCGGCTTGTTATCCTTGCCTTCTTCCTCCGTTATAGACTGATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAATAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTTTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCATTGGTTACAGCAAACACTGTTCTCTCAATCTTGGCCATTGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACCTTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGTGCACCAGAGATGTACTTCTGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCACAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAATAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCCGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAAGCTGCTCGAGAGGCCATGTGTTTCCTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATACGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACAGGATGTGTATTTAGGAGGCAAGCTTTATACGGTTATAATCCTCCCAAGGATGCCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGGTGCAGATGGAGAGGCTGCAAGCCTAAGAGGACCAGACGATGATAAACAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGCCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCTAGCCAGCTTAAAGAAGCCATTCACGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATCACAGAGGACATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCAAAGCGTCCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCTGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGCTTTAAGGAAGGAAACTTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTGTTCTTCCTGCTGTCTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCGGGTTTGTATTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCACCTCTTTGCAGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACTAACTTCACTGTTACCTCAAAGGCAGCAGATGATGAAGAATTTTCAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTTGGCGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCTTGGGGACCTCTATTTGGAAAACTGTTCTTTTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCGACCATAGTTGTTATATGGTCGGTACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTCGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3234 0.4447 MHILGAHTKTCKPQFSFIKHKFSSQLHPLTIVVLCHIVVHSVTTTNMEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDMFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGTEDDENSHFPAVIAGGRSRPVSGELPISSHYGEHASLHNRVHPYLASDPRNGKWDENKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAIDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKDAKRPKMISCDCCPCFGKRKKVKYEGNGADGEAASLRGPDDDKQMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGFKEGNLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFSELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02349 1077 SUPERFAMILY RING/U-box 67 155 - -
Phac3g02349 1077 Coils Coil 467 487 - -
Phac3g02349 1077 Pfam Cellulose synthase 369 1071 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phac3g02349 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 155 IPR013083 -
Phac3g02349 1077 ProSiteProfiles Zinc finger RING-type profile. 83 129 IPR001841 -
Phac3g02349 1077 FunFam Cellulose synthase 65 156 - -
Phac3g02349 1077 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 514 660 IPR029044 -
Phac3g02349 1077 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1044 - -
Phac3g02349 1077 SUPERFAMILY Nucleotide-diphospho-sugar transferases 382 851 IPR029044 -
Phac3g02349 1077 FunFam Cellulose synthase 486 660 - -
Phac3g02349 1077 Pfam Zinc-binding RING-finger 73 150 IPR027934 -
Phac3g02349 1077 CDD mRING-HC-C4C4_CesA 81 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02349 Phac-Chr3 26488677 26494655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02349 47 1077 Cell Wall Biosynthesis AT5G17420 85.397 0.0 1824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02349 K10999 - gmx:100779834 2051.94