Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02272 ATGGGTAGGGGTGATGTCTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCACCTTTTCCTCCCACTGCTCGATCTGATAGTTTCAGTTTGAACGATAGGGCGTTGAAGGTTAGTCCAAGCATACTTTTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTCTGCTACACCTGCTGGTTAGATTTCTGTGGAGACCCCAAACTAGAGAGCCTGATGATTTAGACAATGCCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTCGACCAGTCATTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAAAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAACCTGAGGACAAGCTCAGGTTGCTTCCCAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGTTTGCTCCCTGAATTCTCTGCAGGCAACTCATGTTCTCCCTATGTTCTTGTCCTAGAATCTGGGAGTGAGAGTTCTAGGGAGATTGTTCCTGAAAGAGAGGCTGCGGTTGGAAGGTCTAGTTCGGTTATGACCTCAAATTCTCGCCTTGGATGCCGTGGAGATAGTGAATTTGGATCAATCCGTGTGGATTTGAAATCAGGTGAGTTATTAAGTGAAGCTCCTGATCCAACAGTACCAAATGGTGTGGAAAAAGTGGTTACTGTTAAACTGGGGAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGAAGAGAGTAGTACTACAAACAATGTGGATTCTAGAAGGTGTTTTTCCATGGGGTCATTTGCTTATGTTATGGACGAGAGTTCCTCACTGCAAGTGCCCATTCGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAGTCCAGAAGGGATTTCAAGTTTGCAGCCTTTGGTGCAACTGTGGTTGAGGATGATGTTGCTAGTACTGGGGCTGCAACTGAAAGGACAACTTGTAATGGGAATAGTGCTGCAATTGGAAGAAGCAGAAAGGAAAGTTTTTCCATATCAAAGATTTGGCTCAGGGGGAAAAAGGATAAGCCAAATGCTGTGGCAGATTCATCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCAAAGTCTAGTGCTGTTGCTGCTTCTGGTAGTGCTGATGATGATGATTTGAAAGGCAAGAATTCCAAGTTTGATACAAGCAGTACCATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGTCAGTTCGATTTAGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAACAAGGTTGTTCACTCCGCATCCAACCTCTAG 1524 0.4534 MGRGDVFVSPPEQPPYFLSQPNSPFPPTARSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNATALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSAGNSCSPYVLVLESGSESSREIVPEREAAVGRSSSVMTSNSRLGCRGDSEFGSIRVDLKSGELLSEAPDPTVPNGVEKVVTVKLGKFKSVDGGGDGGEESSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAAFGATVVEDDVASTGAATERTTCNGNSAAIGRSRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSAVAASGSADDDDLKGKNSKFDTSSTISEMDIGKWENGGGSQFDLDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02272 507 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 392 - -
Phac3g02272 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Phac3g02272 507 MobiDBLite consensus disorder prediction 312 335 - -
Phac3g02272 507 FunFam RING-H2 finger protein ATL46 90 175 - -
Phac3g02272 507 CDD RING-H2_EL5-like 127 170 - -
Phac3g02272 507 SUPERFAMILY RING/U-box 107 176 - -
Phac3g02272 507 Pfam Ring finger domain 127 170 IPR001841 -
Phac3g02272 507 MobiDBLite consensus disorder prediction 1 25 - -
Phac3g02272 507 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Phac3g02272 507 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02272 Phac-Chr3 25874912 25877860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02272 35 507 C3H Transcription Factor Family AT2G18650 45.951 6.28e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02272 - - gmx:100797283 865.914