Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02271 ATGGGTAGGGGTGATGTCTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCACCTTTTCCTCCCACTGCTCGATCTGATAGTTTCAGTTTGAACGATAGGGCGTTGAAGGTTAGTCCAAGCATACTTTTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTCTGCTACACCTGCTGGTTAGATTTCTGTGGAGACCCCAAACTAGAGAGCCTGATGATTTAGACAATGCCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTCGACCAGTCATTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAAAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAACCTGAGGACAAGCTCAGGTTGCTTCCCAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGTTTGCTCCCTGAATTCTCTGCAGGCAACTCATGTTCTCCCTATGTTCTTGTCCTAGAATCTGGGAGTGAGAGTTCTAGGGAGATTGTTCCTGAAAGAGAGGCTGCGGTTGGAAGGTCTAGTTCGGTTATGACCTCAAATTCTCGCCTTGGATGCCGTGGAGATAGTGAATTTGGATCAATCCGTGTGGATTTGAAATCAGGTGAGTTATTAAGTGAAGCTCCTGATCCAACAGTACCAAATGGTGTGGAAAAAGTGGTTACTGTTAAACTGGGGAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGAAGAGAGTAGTACTACAAACAATGTGGATTCTAGAAGGTGTTTTTCCATGGGGTCATTTGCTTATGTTATGGACGAGAGTTCCTCACTGCAAGTGCCCATTCGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAGTCCAGAAGGGATTTCAAGTTTGCAGCCTTTGGTGCAACTGTGGTTGAGGATGATGTTGCTAGTACTGGGGCTGCAACTGAAAGGACAACTTGTAATGGGAATAGTGCTGCAATTGGAAGAAGCAGAAAGGAAAGTTTTTCCATATCAAAGATTTGGCTCAGGGGGAAAAAGGATAAGCCAAATGCTGTGGCAGATTCATCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCAAAGTCTAGTGCTGTTGCTGCTTCTGGTAGTGCTGATGATGATGATTTGAAAGGCAAGAATTCCAAGTTTGATACAAGCAGTACCATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGTCAGTTCGATTTAGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAACAAGGGATATTATACGAAAGTGCAAGAGCATTATCTGCAACCACAAACGTTGAAAGGATGGAGAGATTACCTAAGGAACATAAGCAGATGGTGGCAATAA 1593 0.4488 MGRGDVFVSPPEQPPYFLSQPNSPFPPTARSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNATALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSAGNSCSPYVLVLESGSESSREIVPEREAAVGRSSSVMTSNSRLGCRGDSEFGSIRVDLKSGELLSEAPDPTVPNGVEKVVTVKLGKFKSVDGGGDGGEESSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAAFGATVVEDDVASTGAATERTTCNGNSAAIGRSRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSAVAASGSADDDDLKGKNSKFDTSSTISEMDIGKWENGGGSQFDLDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKGYYTKVQEHYLQPQTLKGWRDYLRNISRWWQ* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02271 530 Pfam Ring finger domain 127 170 IPR001841 -
Phac3g02271 530 MobiDBLite consensus disorder prediction 312 335 - -
Phac3g02271 530 CDD RING-H2_EL5-like 127 170 - -
Phac3g02271 530 FunFam RING-H2 finger protein ATL46 90 175 - -
Phac3g02271 530 MobiDBLite consensus disorder prediction 1 25 - -
Phac3g02271 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Phac3g02271 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 392 - -
Phac3g02271 530 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Phac3g02271 530 SMART ring_2 128 169 IPR001841 -
Phac3g02271 530 SUPERFAMILY RING/U-box 107 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02271 Phac-Chr3 25873351 25877860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02271 35 499 C3H Transcription Factor Family AT2G18650 45.773 7.93e-100 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02271 - - gmx:100797283 851.277