Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02252 ATGTATAAGTGCTGCTTATCATCCCTTTTCTCTGGGTTTTTGATTTTTTTGTTTGTGCTTCAACAAACACCAACGGGGAATGCGTCAAATGAAACATCAAAGTATGAAGAGATGAAGTTGAGAGTAGGGGTGCCCATGAAAGATGGTTTCCGACAATTTGTGGATGTAGTTAACTACGCTACTGGTCAAGAAAAATACAACATAACTGGATATTGCATGGATGTTTTCAATGCCGTCTTAACCCGTTTGCGCTTCAATGTTTCTCTAAGCATTGAACCTTATCCTGTTGACACAAGTGAGGGTTCTGGGTACGATGATCTTCTAAAACAAATCCCGTCAAAGTATGATGTGGTGGTAGGGGATATAACAATCCTAGCCAGCCGTTCAAACTATGTAGATTTCACGGTGCCATATACTGCATCGGGAGTTAAAATGGTAGTACCAGTTCAACATGGGAGGGATCAAAACATGTGGACTTTTGTCAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTTATCATGGAAAGAAATGTAAGCGCACTGCCTAACCAAGAGGGTTCTCCAAATCAGAAAAAGCTTTGCCCTGCAACCATCTTATGGTTTCCAATCTCACAAGCCATTCTTCCTGAAAGACAAGTAGTGGTAAAAAGCTGCTCTAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTATACTGCTAACTTGACTTCTATATTGACCTTGGATCAACTGCAACCCAGCTTTCTCAACGCAAATGACTTAAGAAAAGGGGGCTATTTCGTTGGATACCAAACGGGGTCTTTCGTTCACGATGTGTTGGTTAAGCAATTTAAGTTTGACCCATCAAAACTGAAGCCATATAGCAGCAGTTCCGAGTATCATGAAGCTCTAAAGCTTGGAAGCGAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTGCCCTACCTTAAACTCTACATTCAAGAATACGGATCCAATTACATTATGGCTGGCCCCAAATATAGAAATGCTGGGTTTGGTTTTGCACTCCCTTTAAACTCGAATCTGACGGCTTGCTTTTCGAGAGCCATCTTGGATGTGACTGAAAGTGATTTAATGAATGAAATTGAGGAAAAATATTTTGGGAAGAATGATATTGGACAAGACTCGTCTGGGGAAGTATCTTCTGCTCCTCTCAGCCTCAGCTTTCATAGCTTTGCGGGGCTCTTTATGATTACTGGTATTTCAACTTTGTTTGCGCTATTGATCTCAGAAAGTGTTATATGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCAAAGGTACTTGTCCTTCACGCCTTCTTCCACGGAACTACGCGTTCATCCAACTCATGATTCAACTCACGGTATAGAGATCGTTTAG 1440 0.416 MYKCCLSSLFSGFLIFLFVLQQTPTGNASNETSKYEEMKLRVGVPMKDGFRQFVDVVNYATGQEKYNITGYCMDVFNAVLTRLRFNVSLSIEPYPVDTSEGSGYDDLLKQIPSKYDVVVGDITILASRSNYVDFTVPYTASGVKMVVPVQHGRDQNMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVSALPNQEGSPNQKKLCPATILWFPISQAILPERQVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLNANDLRKGGYFVGYQTGSFVHDVLVKQFKFDPSKLKPYSSSSEYHEALKLGSENGGVAAIFDEVPYLKLYIQEYGSNYIMAGPKYRNAGFGFALPLNSNLTACFSRAILDVTESDLMNEIEEKYFGKNDIGQDSSGEVSSAPLSLSFHSFAGLFMITGISTLFALLISESVIWQKPILMAKALSQRYLSFTPSSTELRVHPTHDSTHGIEIV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02252 479 FunFam Glutamate receptor 2.7 35 156 - -
Phac3g02252 479 Gene3D - 32 157 - -
Phac3g02252 479 Pfam Ligand-gated ion channel 395 426 IPR001320 GO:0015276|GO:0016020
Phac3g02252 479 SMART GluR_14 39 394 IPR001320 GO:0015276|GO:0016020
Phac3g02252 479 CDD GluR_Plant 39 392 - -
Phac3g02252 479 Pfam Bacterial extracellular solute-binding proteins, family 3 65 394 IPR001638 -
Phac3g02252 479 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 442 IPR015683 -
Phac3g02252 479 Gene3D - 158 296 - -
Phac3g02252 479 SUPERFAMILY Periplasmic binding protein-like II 16 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02252 Phac-Chr3 25622021 25624240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02252 39 442 Ion Channels AT2G29110 42.453 7.47e-88 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02252 K05387 - gmx:100807817 694.501