Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02245 ATGGGAATTGAAAGAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGTGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTGTGGGTGTGCGAGGTCTGCGAGCAGGCCCCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGCGACTCTGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCTGTTGAGCCCTTCTTCGAATCCGCCGACTCCATCGTCAAGGCCACCGCCGCTGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGGAGCCTCCGATGCCTTCGCCCATGACGACCCCGACGCCGCCGCCTGGCTCATCCCCAACCCCAATTTCGGGTCGAAACTCATGGACGCCACTGACATGAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGATTTCGATTACTCAAACTCCTTCCACAACAACAACTCCGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCTTCCTTCGCTCCTCCCCTCATCAATAACCACCACCAATCAGAAAGCTGCTTCGACATCGACTTTTGCCGCTCCAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTCAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGATGGGAACACCGTGTCGGACATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCCGGAGTAAGTGGAGGACAAGGGGCAACGCAGTTGTGTGGAATGGACCGTGAAGCGAGGGTTCTGCGATACAGAGAGAAGAGAAAGAACCGAAAGTTTGAGAAAACCATTCGATACGCATCGCGGAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGGCGGTTCGCGAAGCGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGTCGCTGATGCTTGACAGTCCATACGGCGTCGTACCATCGTTTTAG 1119 0.5809 MGIERGGLKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWVCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFESADSIVKATAAASFGFIVPSDDATGASDAFAHDDPDAAAWLIPNPNFGSKLMDATDMKSKEIFYSEMDPFLDFDYSNSFHNNNSGNDSVVPVQTKPSFAPPLINNHHQSESCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAASLMLDSPYGVVPSF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02245 372 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Phac3g02245 372 CDD Bbox1_BBX-like 21 64 - -
Phac3g02245 372 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Phac3g02245 372 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Phac3g02245 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 358 IPR045281 GO:0009909
Phac3g02245 372 SMART bboxneu5 65 107 IPR000315 GO:0008270
Phac3g02245 372 SMART bboxneu5 17 64 IPR000315 GO:0008270
Phac3g02245 372 CDD Bbox1_BBX-like 64 107 - -
Phac3g02245 372 Pfam CCT motif 300 342 IPR010402 GO:0005515
Phac3g02245 372 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Phac3g02245 372 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02245 Phac-Chr3 25510606 25512668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02245 1 372 C2C2-CO-like Transcription Factor Family AT5G57660 55.643 1.65e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phac3g02245 zf-B_box 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02245 - - gmx:100805693 639.802