Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02179 ATGTATTCGAGTTCGAGTCAGTTCGACGGCAACGCAGCCTTCTCTGGCGGCGGATTTATGCCTTCTCAGGCTACTCAGGGCACTGATCCTTCACTGGGTTTCTCCAAGAATCGCGATGCTCAGTCCTTGCTTCCTCTAACAGTTAAGCAAATATACGATGCGTTTCAATCAAGCGATGATAAAGCCAATTTGATTGTTGACGGTGTGGACGTTAATAATGTTACTCTTATAGGAAGAGTCTGCAACATAGCTGGACGAGTTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGGAAGATTGAGTGTAATAAATGGTTTCAGGAAGCTGCTGATTCAAATGAAGCAGAGTCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACATTTGAAAAACTTTCAGGGTAAAAGGACCTTGAATGTTTTCTATTTCAGGCCTGTGACTGACTTTAACGAGGTTGCTAGTCATTTCATAGATTGCATATATGTGCATCTCTACAATTCCAGGATTCGGAGTAGTGTCCCTAATCAGCAACATGTTATGAATTCTACGCCAATTACTCCCACAATGGGTTATCAAGCTAAAGTTGTTCCACCAACAAATCAGTTCTCTGATCAACATGTCATTGGCCAGAAGAGTGCTGAAACTATGGTCTTAGATTTTCTGCATCTTCCCGCCAACAGGTCAAGGAATGAGGGAGTCCGTCGTGATCTTATTGCACAGCATCTTGAAATTTCTTTGGATAAGCTCATGCTGGCTATTAAAAACCTTATCGATGAAGGTGCCGTTTATGAAACTATTGCTGATCACTATAAGTCAATCATCAATGGTTGA 837 0.4205 MYSSSSQFDGNAAFSGGGFMPSQATQGTDPSLGFSKNRDAQSLLPLTVKQIYDAFQSSDDKANLIVDGVDVNNVTLIGRVCNIAGRVTDVTFVLDDGTGKIECNKWFQEAADSNEAESILDGMYARLHGHLKNFQGKRTLNVFYFRPVTDFNEVASHFIDCIYVHLYNSRIRSSVPNQQHVMNSTPITPTMGYQAKVVPPTNQFSDQHVIGQKSAETMVLDFLHLPANRSRNEGVRRDLIAQHLEISLDKLMLAIKNLIDEGAVYETIADHYKSIING* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02179 278 Gene3D - 207 276 IPR036388 -
Phac3g02179 278 Pfam OB-fold nucleic acid binding domain 74 142 IPR004365 GO:0003676
Phac3g02179 278 SUPERFAMILY "Winged helix" DNA-binding domain 213 275 IPR036390 -
Phac3g02179 278 FunFam replication protein A 32 kDa subunit A-like 36 170 - -
Phac3g02179 278 PANTHER REPLICATION PROTEIN A-RELATED 7 275 IPR040260 -
Phac3g02179 278 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Phac3g02179 278 Gene3D - 35 170 IPR012340 -
Phac3g02179 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phac3g02179 278 CDD RPA2_DBD_D 73 166 - -
Phac3g02179 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Phac3g02179 278 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02179 Phac-Chr3 24912706 24919368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02179 4 275 Core DNA Replication Machinery Family AT2G24490 44.000 7.19e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02179 K10739 - gmx:100782819 459.144