Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02175 ATGGACTCTTCTGCATCACCGCCAAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTTTCCCTTTTCCACTCCTTCACCTCTTATCCATCTCTCACCCTCACAGGCAGCAACACGGTGGATGCACCATCGGAGGCAGCCGGCGGCGGAGGCTCCACCAACCTCTCCATATTCACCGGTGCTCCCAAGTTCGAGGACTTTCTAGGCGGTTCTGCCGTAGCAGACACCACCGCCACGGGTGCACCGCCACGACTTCCGCAGTTCTCCACCGACAACAACCTATACGATTCGGAGCTGAAGACTACAATAGCCGCGTGCTTCCCTCGCGGCTTCGCGGCCGAACCAACCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTCGACACCTTCGGCCAACGAACTTCCATCTACCGTGGCGTCACCCGACATAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGCTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGTGGAGATGAAGAACATGACCAGGCAAGAGTTTGTGGCTTCTCTACGGAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCATCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCTGAAGCCTATGACATTGCAGCTATCAAATTCAGGGGGTTAAATGCGGTCACAAACTTCGACATGAGTCGCTACGACGTTAAGAGCATTGCAAATAGCACACTTCCCATTGGGGGCTTATCTAGCAAGAACAAAAACTCCGCAGATTCTGCTTCTGAGAGCAAAAGCCACGAGGCAAGCCGATCCGACGAACGAGATCCATCATCCGCTTCATCCGTAACCTTTGGATCACAGCAGCAGCCTTCAAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCATAATCCTACACTCGACAACAGTGGAGTCAGGAACACTACTAGTGTTACCACAACTTCTTTTGCATCTTCCAACAACGGCACTGCTGGTGCCACACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAGTACCGGCAGTGACAACAATGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAACAAAGTGGTCATGGTAATGGTAATGGTCATGGAAATGGAAGCAGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGGAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1584 0.5069 MDSSASPPNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTSYPSLTLTGSNTVDAPSEAAGGGGSTNLSIFTGAPKFEDFLGGSAVADTTATGAPPRLPQFSTDNNLYDSELKTTIAACFPRGFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELVEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSADSASESKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTTSVTTTSFASSNNGTAGATPFQMDLSSAPSSTGSDNNAAFFSGGGIFVQQQSGHGNGNGHGNGSSGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02175 527 Gene3D AP2/ERF domain 251 311 IPR036955 GO:0003700|GO:0006355
Phac3g02175 527 Gene3D AP2/ERF domain 149 217 IPR036955 GO:0003700|GO:0006355
Phac3g02175 527 CDD AP2 148 217 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 FunFam AP2-like ethylene-responsive transcription factor 250 311 - -
Phac3g02175 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 401 - -
Phac3g02175 527 MobiDBLite consensus disorder prediction 354 374 - -
Phac3g02175 527 SUPERFAMILY DNA-binding domain 148 217 IPR016177 GO:0003677
Phac3g02175 527 MobiDBLite consensus disorder prediction 338 353 - -
Phac3g02175 527 Pfam AP2 domain 149 207 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 Pfam AP2 domain 251 301 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 ProSiteProfiles AP2/ERF domain profile. 149 215 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 MobiDBLite consensus disorder prediction 324 374 - -
Phac3g02175 527 SUPERFAMILY DNA-binding domain 250 311 IPR016177 GO:0003677
Phac3g02175 527 CDD AP2 250 311 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 SMART rav1_2 149 221 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 SMART rav1_2 251 315 IPR001471 GO:0003700|GO:0006355
Phac3g02175 527 FunFam AP2-like ethylene-responsive transcription factor ANT 148 217 - -
Phac3g02175 527 ProSiteProfiles AP2/ERF domain profile. 251 309 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02175 Phac-Chr3 24892346 24896226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02175 94 396 AP2-EREBP Transcription Factor Family AT5G57390 68.615 9.46e-142 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phac3g02175 AP2 2.6e-12 CL0081