Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02089 ATGAACTACCACAACACGCGCCGGAGCCCTTCCGGCTTCCGCTCTGGCGCCGCCCCTAACCACCGCTCCTTCGACAGTCCTCCGCGTCGCTCTCCCGGCAGGGGAGGAGGATTCCGGCCGATGGGAGGGGAAGGTCCTGGTGAATTCGGATTCAACGGCCACCAGCCGCCACCGCCGCTGGTTGGCCAAAAACGAGGGTTTCCGGTCTCCGGACGCGGTGGCGGTTCGCCCGATCGTTTAGAGGGTGGAAATTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGCCCGCTGTTTGAAGAACACGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTCATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATACAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAACAGGCTCCTGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGAGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCACACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGAGTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCTAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCTCAAGACTTCCATCCAATATTACTGATCCTATGGGTGATCGAATGCCTCCCCCTAATGCTTGGCGACCGATGCATCCGCCAAATATGGGGCCATCCACTAATGCTGGTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGCATTGCCTACAAATGCAGGCGGTCCTATGACTGGCTTGGGAGGTCCCATGGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCTATGCCACAAATTCCACCACTCAATCAACAAATATCACCCTTACAGAAGAATATCCAATCATCCCAGGAACTGCCACCATCCAATCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTCTTAGACAGCATGGCCAGCCACTTCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACAGAGTGCTTTGTCTGCTGCATTTCCTCAGACTCCTCTTGACGCCAGCATGCATTCTAATATTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCATGACACAGCAGCCTCTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTATCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAGCCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGCTGGGGCTGTGGCACAAACAGTGGCCAGCACTCATGCAACTGCTCCTGCTGCAGACGCCCCTTCATCCAAACTTGCCACTTCAGCCTTACAAGCAATAAACCATAACTCGGCTCTTGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGCGTTACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTAACTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAGTGCTACCTGCCCAGCAAATTCCACAGTTCCAACAGGTTCAGCCTCAGAGTCATCTCCAAGGACAAGTTCTTCACCAGCAACAAGTACAACAGCCTCCTTTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTGCAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACACGAATTGATGTGGAAAAATAAGCCTTCAGGAGTTTGA 2199 0.4825 MNYHNTRRSPSGFRSGAAPNHRSFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPPLVGQKRGFPVSGRGGGSPDRLEGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALDGVYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNITDPMGDRMPPPNAWRPMHPPNMGPSTNAGLHGMGPPMLPRSGEMALPTNAGGPMTGLGGPMDGRFQVQSMPSMSQQNFNQPMPQIPPLNQQISPLQKNIQSSQELPPSNQLYPQAPVPYPQTSLRQHGQPLLPPSAGPLQSQQIHGVSGQFPTSQPQTQQSALSAAFPQTPLDASMHSNIALATNQQQVPPSMTQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGAVAQTVASTHATAPAADAPSSKLATSALQAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVTVQQSQTQSQPSVLPAQQIPQFQQVQPQSHLQGQVLHQQQVQQPPLSSSFQAYGVTGPQNVQEVGYKQLQPTVISAGDPGRYSQGVHSTHELMWKNKPSGV* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02089 732 Gene3D - 81 171 IPR012677 -
Phac3g02089 732 SMART ww_5 588 620 IPR001202 GO:0005515
Phac3g02089 732 SUPERFAMILY WW domain 592 625 IPR036020 GO:0005515
Phac3g02089 732 Gene3D - 586 637 - -
Phac3g02089 732 ProSiteProfiles WW/rsp5/WWP domain profile. 593 620 IPR001202 GO:0005515
Phac3g02089 732 FunFam flowering time control protein FCA isoform X2 80 172 - -
Phac3g02089 732 FunFam Flowering time control protein FCA 173 263 - -
Phac3g02089 732 CDD WW 590 620 IPR001202 GO:0005515
Phac3g02089 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Phac3g02089 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 247 IPR000504 GO:0003723
Phac3g02089 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Phac3g02089 732 SUPERFAMILY RNA-binding domain, RBD 177 279 IPR035979 GO:0003676
Phac3g02089 732 Gene3D - 172 265 IPR012677 -
Phac3g02089 732 ProSitePatterns WW/rsp5/WWP domain signature. 593 618 IPR001202 GO:0005515
Phac3g02089 732 MobiDBLite consensus disorder prediction 1 80 - -
Phac3g02089 732 MobiDBLite consensus disorder prediction 257 454 - -
Phac3g02089 732 MobiDBLite consensus disorder prediction 357 454 - -
Phac3g02089 732 SMART rrm1_1 87 163 IPR000504 GO:0003723
Phac3g02089 732 SMART rrm1_1 178 253 IPR000504 GO:0003723
Phac3g02089 732 PANTHER RNA BINDING PROTEIN 44 515 - -
Phac3g02089 732 SUPERFAMILY RNA-binding domain, RBD 27 165 IPR035979 GO:0003676
Phac3g02089 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Phac3g02089 732 Pfam WW domain 592 618 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02089 Phac-Chr3 23696371 23707322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02089 85 262 Eukaryotic Initiation Factors Gene Family AT4G34110 26.562 1.64e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02089 - - gmx:100798390 1120.92