Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02029 ATGGAGGCTGAGTTTGGGGGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGACGGTGATCTTTTCACTGCTCAGCCACTCAATTCAGTGCCATCAGATTGTAGGAGCCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCAAAAAAGACCAATCCTTCCAACGATTGGTCTTCTTCTGCAATCAACCCTGGTGAGGGAAAGAAGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGGGAAGGTGAAGGGGAGGGACTGAATGCTGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTTACGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTACTGCTGCTGCTACCACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTACGGCTGATCTTGGTAATTCCAAGGATTACCACCGTAGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGAAAGAGAAGTTGTCGTAGGCGTCTGGATGGCCATAACAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTGTTAATGAAGGCTCTCTTAAGGATGGAAGTGGCAGTAGCTATCTTTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGGTCAGATCATACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACCTGGCAAGTCTGGCTGCTCCAAATAATGGTAGAACTTTAGCCTCCTTATTGGAGGACTCTAAAGGTTTGTTAAATGCTGGGACACCTGGAGGTGCTCATGAAGAACCCAACCTTAATTCAAACACTCCTGAAGCTTCCAGACGGCCTGGTTCTTCCATTAAGATTGATAATGGCTTCATCAGTCAGGACCCTCCAATATCCATGGCACAGTGTGAAACAGGGCCTACTAATGGTGGGACACAAGAATGTATACCTTCAGGAGATGGTGGAATAGAAAATTCAAAATCACCTCCAGGAGCACCATTCTCAAGTATAAGTCAATCAAGGGGAAGTCTTCCATGCCAATTAACTGCAGTGGAGACTACACTTAGAAGGAACAACTTAAATAACGTTGACCTGAATAATGTATACAGTGATATGCAGAACACTGTTGAGAATCATAAGAAGCCTTATCATCATGTGGTATCTCAGATGGGATCTATTGATCTTCCCTCATGGTTGCAATGTGATTCTCTTAAATCAAGTCCTCCACAGACGAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGGCCGCAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATACTAACGATATATCTTCGTCTTGAAAAATCTGCATGGGAGGAGCTCTACTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTGGCGAATCAAATGATACATTTTGGAGGACAGGATGGGTATTTGCAAGGGTGCAGCAATCTTTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGCCCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGCTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACATGCTAGTTGTCATGATTTGATTGGTGGAGCTGATAAATCCATTCAGCATCTCAACTTCACTTGTCATATACCAAATGTAACTGGGAGGGGTTTTATTGAGGTGGAAGACCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAAAAAGAAGTCTGTTCAGAGATCTGCAAATTGGAGAATGTGATTGAGGCTGCTGAAACCACTAATGATTTCCAGATTAAAAACCAACAAATGGAAGAAAAGACTCAAGCTCTTCAATTTTTGCAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCATGGCTCCTATCCAAGATCTCTTTCAATTTAATCGGATCTCGTGGCTTGTTGACTTCTCGATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGATATTATATTTGAGGGCGGTGTTGATGCAGGAGAACATGCCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCTGTGATGAGAAACAGTAGACCTATGGTAGAACTACTGTTAAGATTTGTGCCAGTTACAACATCAGATGCTGCTGACAGTGAAGTGAAGCAAGTTGAAAAGGCTACTCACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGCCAGAGACAGTACAGGTTTGACCCCCAACGACTACGCATGCCTTAGGGGCTATTACTCTTACGTTCAACTCGTTCAGAACAAGACCAACAAAAAAGGTGAAAGACTACACGTGGTTGATATACCTGGTACTGTTGTAGACAGTGGTAACACAAAGCAGAAGCTATCAGATCAACATAGGACAGGTAAAATTTCTAGTTTACAGACTGAGAAGATTGAAAGCACAGAAATGGCAAGTGAATGCAGGGTATGCCAGCAGAAGTTGTCTTATGGTGGCATAAGAACTGCAGTGGTTTATAGGCCAGCCTTGCTCTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGAACAATATAA 3120 0.4362 MEAEFGGKNQYLYGPVVSGMKKAVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKTNPSNDWSSSAINPGEGKKELEKRRRGVIGEGEGEGLNAEGGSLSLNLGGYGYPFMVEGEEKSGKKTKVIGTTTAAATTSNRAVCQVQDCTADLGNSKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLDGHNRRRRKTHPDVTVVNEGSLKDGSGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASLAAPNNGRTLASLLEDSKGLLNAGTPGGAHEEPNLNSNTPEASRRPGSSIKIDNGFISQDPPISMAQCETGPTNGGTQECIPSGDGGIENSKSPPGAPFSSISQSRGSLPCQLTAVETTLRRNNLNNVDLNNVYSDMQNTVENHKKPYHHVVSQMGSIDLPSWLQCDSLKSSPPQTSRNSDSTSNQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLLLRPQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLGESNDTFWRTGWVFARVQQSLAFLYNGQVVLDVPLCLKSPHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYLVHASCHDLIGGADKSIQHLNFTCHIPNVTGRGFIEVEDHGLSSCSFPFIVAEKEVCSEICKLENVIEAAETTNDFQIKNQQMEEKTQALQFLQEMGWLLHRSRVKVRLGPMAPIQDLFQFNRISWLVDFSMDHGWCAVMKKLLDIIFEGGVDAGEHASIELALLDMSLLHKAVMRNSRPMVELLLRFVPVTTSDAADSEVKQVEKATHRFLFRPDTVGPAGLTPLHVAASMSGSENVLDALTDDPGMVGIEVWKSARDSTGLTPNDYACLRGYYSYVQLVQNKTNKKGERLHVVDIPGTVVDSGNTKQKLSDQHRTGKISSLQTEKIESTEMASECRVCQQKLSYGGIRTAVVYRPALLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02029 1039 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Phac3g02029 1039 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Phac3g02029 1039 FunFam Squamosa promoter-binding-like protein 14 149 219 - -
Phac3g02029 1039 Pfam SBP domain 158 231 IPR004333 GO:0003677
Phac3g02029 1039 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Phac3g02029 1039 MobiDBLite consensus disorder prediction 308 339 - -
Phac3g02029 1039 MobiDBLite consensus disorder prediction 355 395 - -
Phac3g02029 1039 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 77 920 IPR044817 GO:0003677
Phac3g02029 1039 Gene3D - 788 954 IPR036770 -
Phac3g02029 1039 MobiDBLite consensus disorder prediction 381 395 - -
Phac3g02029 1039 MobiDBLite consensus disorder prediction 456 484 - -
Phac3g02029 1039 SMART ANK_2a 861 891 IPR002110 GO:0005515
Phac3g02029 1039 SMART ANK_2a 805 834 IPR002110 GO:0005515
Phac3g02029 1039 SMART ANK_2a 901 930 IPR002110 GO:0005515
Phac3g02029 1039 MobiDBLite consensus disorder prediction 222 242 - -
Phac3g02029 1039 MobiDBLite consensus disorder prediction 318 332 - -
Phac3g02029 1039 SUPERFAMILY Ankyrin repeat 806 923 IPR036770 -
Phac3g02029 1039 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02029 Phac-Chr3 22932795 22939826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02029 26 1038 SBP-box Gene Family AT3G60030 45.578 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac3g02029 SBP 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02029 - - gsj:114419913 1621.68