Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01988 ATGTCAGGTGACACAGTTCTTATTCAGGAAGCCATGGGAGAGAAGTTAGGAAAGTTCATACAAAATGTGTCAAGTTTTCTAGGAGCCATAGCCTTAGCCTTCACCAAGGGTTGGCTTCTGAGCCTTGTCCTTCTATCTTCTGTTCCTCTTCTTGTCCTCTCCGGTTCCCTGATGAGCTTAGCTTTTGCAAAGATGGCATCTCGAGGACAAGAAGCTTATTCTGAAGCAGCAACTGTTGTGGAGCAGACAATTGGATCAATTCGAACTGTTGCGTCATTTACAGGTGAGAAGCAAGCTATAGCTCAATACAATAAATACTTAACTCAAGCTTACAGAATTGCAGTGCAAGAGGGCGTGGTTAGTGGTTTTGGCTTGGGTTCACTTCAACTATTTTCGATCTGCACTTTTGCTTTGGCAATATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTACACAGGAGGACAAGTCATTGGTGTATTTTGGGCAATAATGTCTGGTTGTTTGCGTCTGGGGCAGGCATCTCCAAGCTTAAGAGCTTTTTCCGCAGGAAAAGCTGCTGCCTTTAAAATGTTTGAAACAATAAAACGGCAGCCAGATATTGATGCTTATGACACAGACGGTCGACAGGTAGATGATATTTCGGGAGATATAGAACTTAGGGAGGTTTGCTTTTGTTATCCTTCAAGGCCAGATGAATTGATATTCAATGGATTTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGAAGTGGGAAATCAACAGTTATTAGTTTGATTGAGAGATTTTATGATCCAGAAGCCGGTGAAGTTCTCATTGACGGCATCAACCTCAGAAAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGGCTATGGTAAGGATTGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTATTAACTTCATAGATGAATTTCCACATGGGCTTGACACAATGGTCGGCGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAACAAAAAATATCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTTCTCCTTGATGAAGCCACAAGTGCTCTTGATGTAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAGTTATGATCAACCGAACAACTGTCATTGTAGCCCATCGCTTATGCACAATCAGGAATGCTGATATGATTGCAGTTATTCATCAAGGACAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAACAAATTAGAAGGGACTCGGAACAGCATGATGCAAAGGACACAGGCCAGCAAGAAAACTTCATAGATTCTGAACAACAATTTTCTTTCCCTCTATCTTTAAGCCCAGGATCATCTGGAAGAGGAAATAACAGTCAGCAGTCGTTCAGAATGTCAAATGCCATGCCTATCACACTAGGTCTCTTTGAAACATCAGAAGAAGGGCCTGAAGTTCTTCCTTCAGCAGCTTTGCATAAGCCTCAAGAAGTTTCATTTGTCCGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTACTCATGGGGACTCTAGCAGCAGCAGCAACTGGCGCAGTACAACCCACGATGGGGCTTCTTATTTCCCACATGATAAATACGTTCTTTGAGCCGGCAGATGAACTCCGCAAAGACTCAAATTTTTGGTCATTAATATTTGTTGCCATTAGTGTGGGTGCCTTCATATTTATTCCATTAAGGTCCTACTTCTTTGGTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGTACTTGGAGCAAGGCTGTCAACTGATGCAGCTTCCATTAGAACTTTGGTTGGGGATGCTCTTGGTTTGTTGGTTCAAGATATCGCCACAGCATTCACAGCCTTGGTAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTAATCTTTCTAGTTTTGGTACCTCTAGTATTACTAAATGGATATGTACAAATGAAGTCAGTGCAAGGTTTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATGAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCAATCCAGACAAGTATAAGGCTAGCTTTAATCTGCGGATCAGGCTTTGGTTTATCAATCTTCTTTGTGTACGCTGTTAATGCATGCGGTTTTTATGTTGGGGCAAGACTAATTGAGAATGGCAAAGCATCATTCTCAGATTTTTTCCGTGTATTTTATGTTATCATAATGGCAGCCATAGCAATGTCACAATCTGGCTTCGTGACCCCAGCTGCCAGTAAAGCAAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAGAATAGACCCCGGTGATGAATCTAGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGCTCTTGTATTCAAGGATCTTTCCTTGACTATTCATGCAGGAGAGACAGTTGCTGTAGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATACTCTCATTGCTACAAAGATTTTATGACCCAGATTCAGGCCAGATTACTCTGGATGGAACAGAAGTCCACAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGGCTGGTGAACCAGGAGCCTGTGTTGTTTAATGACACCATTCGAGCCAATATTGCATACGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACGTTAGTGGGGGTGAGAGGGATTCAACTATCCGGAGGACAGAAGCAAAGGGTTGCCATTGCAAGATCCATAGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGTGAGGGTGGATAGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAACATGGAGTGATTGCAGAGAAAGGAAAGCATGACACTTTACTCAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTGCATTCTTCATAA 3351 0.4187 MSGDTVLIQEAMGEKLGKFIQNVSSFLGAIALAFTKGWLLSLVLLSSVPLLVLSGSLMSLAFAKMASRGQEAYSEAATVVEQTIGSIRTVASFTGEKQAIAQYNKYLTQAYRIAVQEGVVSGFGLGSLQLFSICTFALAIWFGGKMVLEKGYTGGQVIGVFWAIMSGCLRLGQASPSLRAFSAGKAAAFKMFETIKRQPDIDAYDTDGRQVDDISGDIELREVCFCYPSRPDELIFNGFSISISSGTTAALVGKSGSGKSTVISLIERFYDPEAGEVLIDGINLRKFQLKWIRQKIGLVSQEPVLFTGSIKENIGYGKDWATDEEIRAAAELANAINFIDEFPHGLDTMVGEHGTQLSGGQKQKISIARAILKDPRILLLDEATSALDVESERVVQETLDRVMINRTTVIVAHRLCTIRNADMIAVIHQGQLQEKGSYAELTKDPDGAFSQLIRLQQIRRDSEQHDAKDTGQQENFIDSEQQFSFPLSLSPGSSGRGNNSQQSFRMSNAMPITLGLFETSEEGPEVLPSAALHKPQEVSFVRIAYLNKPEIPVLLMGTLAAAATGAVQPTMGLLISHMINTFFEPADELRKDSNFWSLIFVAISVGAFIFIPLRSYFFGVAGSKLIKRIRLMCFEKIIHMEIGWFDKAENSSGVLGARLSTDAASIRTLVGDALGLLVQDIATAFTALVIAFEANWQLSLIFLVLVPLVLLNGYVQMKSVQGFSTDAKKLYEEASQVANDAVGNMRTVAAFCAEEKVMELYQKKCLGPIQTSIRLALICGSGFGLSIFFVYAVNACGFYVGARLIENGKASFSDFFRVFYVIIMAAIAMSQSGFVTPAASKAKCSVASIFAILDQKSRIDPGDESRMTLQEVKGEIEFHHVTFKYPTRPNALVFKDLSLTIHAGETVAVVGKSGSGKSTILSLLQRFYDPDSGQITLDGTEVHKLQLKWFRQQMGLVNQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKSPKILLLDEATSALDAESERMVQDALDRVRVDRTTIVVAHRLSTIKDADSIAVVEHGVIAEKGKHDTLLNKGGTYASLVALHSS* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01988 1116 Pfam ABC transporter transmembrane region 554 826 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac3g01988 1116 Pfam ABC transporter transmembrane region 1 167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac3g01988 1116 FunFam ABC transporter B family member 1 208 457 - -
Phac3g01988 1116 PANTHER ABC TRANSPORTER B FAMILY 1 456 IPR039421 -
Phac3g01988 1116 SUPERFAMILY ABC transporter transmembrane region 1 202 IPR036640 GO:0005524|GO:0016020
Phac3g01988 1116 CDD ABC_6TM_Pgp_ABCB1_D2_like 544 859 - -
Phac3g01988 1116 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 876 1113 IPR003439 GO:0005524
Phac3g01988 1116 ProSitePatterns ABC transporters family signature. 357 371 IPR017871 GO:0005524|GO:0016887
Phac3g01988 1116 Pfam ABC transporter 895 1044 IPR003439 GO:0005524
Phac3g01988 1116 FunFam ABC transporter B family member 1 866 1115 - -
Phac3g01988 1116 SMART AAA_5 903 1096 IPR003593 GO:0016887
Phac3g01988 1116 SMART AAA_5 245 417 IPR003593 GO:0016887
Phac3g01988 1116 CDD ABC_MTABC3_MDL1_MDL2 876 1111 - -
Phac3g01988 1116 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 555 841 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac3g01988 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 865 1112 IPR027417 -
Phac3g01988 1116 ProSitePatterns ABC transporters family signature. 1016 1030 IPR017871 GO:0005524|GO:0016887
Phac3g01988 1116 Gene3D ABC transporter type 1, transmembrane domain 818 865 IPR036640 GO:0005524|GO:0016020
Phac3g01988 1116 Gene3D - 866 1113 IPR027417 -
Phac3g01988 1116 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 191 - -
Phac3g01988 1116 FunFam Uncharacterized protein 840 866 - -
Phac3g01988 1116 Gene3D - 216 469 IPR027417 -
Phac3g01988 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 456 IPR027417 -
Phac3g01988 1116 SUPERFAMILY ABC transporter transmembrane region 543 860 IPR036640 GO:0005524|GO:0016020
Phac3g01988 1116 FunFam ABC transporter B family member 1 534 839 - -
Phac3g01988 1116 CDD ABC_MTABC3_MDL1_MDL2 218 456 - -
Phac3g01988 1116 Pfam ABC transporter 237 385 IPR003439 GO:0005524
Phac3g01988 1116 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 218 454 IPR003439 GO:0005524
Phac3g01988 1116 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac3g01988 1116 Gene3D ABC transporter type 1, transmembrane domain 3 786 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01988 Phac-Chr3 22705901 22712118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01988 523 1116 Calmodulin-binding Proteins AT2G36910 34.926 1.76e-111 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01988 K05658 - gmx:100777713 1738.78