Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01983 ATGGATGTGGAGGACTGGGATTTGAGTGCAGAGGACCTGGATTCCCTTGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCAATCTTCTCCGCATCAACATCACAATTCTGCAACTACAACAACGAATCATTTCCCACCAAAACCCCTTCCCAATTTGCGTACCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAGCATTGCCCACTTCATTGAAATCAAGGACAAACACCGACGAACATTCCAAGAAAGGACTGATAAAGTTTTCTGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAGTAGCTACTTTTCGAAAAATCCCTAATTCTTCTTGGAATGCAAAAGAACGGTTATGGCTATTCCCACTATCTTCCTTGTCAGAAGCAGAGAAGTTTCTTGGAGAAGTATCAGGTTATAATATTCAGGTTGAAAACTTGGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGGTACTACAAGATCCCTAGTTATATTGAATCAAAGCTACTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGACGTGTTCTCTTAGCAGATGAAATGGGACTAGGCAAAACATTGCAAGCCATTGCTGTAGCTTCATGCATTCAGGAGTCGTGGCCTGTTCTCATAATTGCACCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATCATATCTTCAAGTGCCAAAAACAGCATTCGTCTGGATGGACTATTCAACATCATCTCATACGATTTAGTGCCAAAGCTACAGAATATGCTTATGAAATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTCTGTATCCTGATGTATATAAGAATGTTCATGACTATGGTAACCGGTATTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTACACAACTTGATGAAGGCAACGGTGCTGATTCGCAGGCTTAAAAATGATGTTCTTACTGAACTTCCTGTAAAGCGCAGACAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGGAAATTAATGCTTTATTTCGAGAGTTGGAGATGGTAAAAACCAAAATTAAGGCTGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCGATACATGACTTCCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACGCCTGCTGCTTCCAGGCAACAATTGGTGACTGAGTTTCAGGAAAAAGATTCTATAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGTACAGTAATCTTTGCAGAATTGTCTTGGACTCCGGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACGGTTGATGACATCATATGGGACGTAGTACAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTAGAGGTCTCAGCTAGTCTGCCAGAGAATAGCCCTTCAAAGCAAAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACATGGATAGCCCTTCAAAGCAGAAAACACTGGACGAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGAACATGATCCCAACCCCAAACGTTCCCGAAACTGA 2118 0.4127 MDVEDWDLSAEDLDSLERDAFQKIAQLRNPPPQSSPHQHHNSATTTTNHFPPKPLPNLRTQTVGASSQGARALPTSLKSRTNTDEHSKKGLIKFSVKFFLHSSGNIAAKFQYDQVVVATFRKIPNSSWNAKERLWLFPLSSLSEAEKFLGEVSGYNIQVENLDPLVQRAIAAASAVPDLQDRYYKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIISSSAKNSIRLDGLFNIISYDLVPKLQNMLMKCDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHDYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKNDVLTELPVKRRQQVFLDLADKDMKEINALFRELEMVKTKIKAAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHDFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSASLPENSPSKQKTLDQFIRRPENMDSPSKQKTLDEFVRRCDNMDRLEHDPNPKRSRN* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01983 705 SMART ultradead3 190 383 IPR014001 -
Phac3g01983 705 FunFam Chromatin remodeling factor18 452 674 - -
Phac3g01983 705 Gene3D - 166 423 IPR038718 -
Phac3g01983 705 SMART helicmild6 520 603 IPR001650 -
Phac3g01983 705 Pfam Helicase conserved C-terminal domain 504 603 IPR001650 -
Phac3g01983 705 Coils Coil 446 466 - -
Phac3g01983 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 417 IPR027417 -
Phac3g01983 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 645 IPR027417 -
Phac3g01983 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 646 IPR001650 -
Phac3g01983 705 MobiDBLite consensus disorder prediction 27 80 - -
Phac3g01983 705 Pfam SNF2-related domain 212 472 IPR000330 GO:0005524|GO:0140658
Phac3g01983 705 MobiDBLite consensus disorder prediction 648 683 - -
Phac3g01983 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 375 IPR014001 -
Phac3g01983 705 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 691 - -
Phac3g01983 705 MobiDBLite consensus disorder prediction 19 84 - -
Phac3g01983 705 CDD SF2_C_SNF 490 614 - -
Phac3g01983 705 CDD DEXHc_HARP_SMARCAL1 194 417 - -
Phac3g01983 705 ProSiteProfiles HARP domain profile. 88 164 IPR010003 -
Phac3g01983 705 MobiDBLite consensus disorder prediction 663 683 - -
Phac3g01983 705 Gene3D - 456 692 IPR027417 -
Phac3g01983 705 FunFam Chromatin remodeling factor18 167 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01983 Phac-Chr3 22665531 22676575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01983 474 645 RAD5 or RAD16-like Gene Family AT1G05120 28.409 7.32e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac3g01983 SNF2_N 1e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01983 K14440 - gmx:100778246 1221.45