Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01982 ATGGATGTGGAGGACTGGGATTTGAGTGCAGAGGACCTGGATTCCCTTGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCAATCTTCTCCGCATCAACATCACAATTCTGCAACTACAACAACGAATCATTTCCCACCAAAACCCCTTCCCAATTTGCGTACCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAGCATTGCCCACTTCATTGAAATCAAGGACAAACACCGCTTTGTGTGTTGCAGACGAACATTCCAAGAAAGGACTGATAAAGTTTTCTGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAGTAGCTACTTTTCGAAAAATCCCTAATTCTTCTTGGAATGCAAAAGAACGGTTATGGCTATTCCCACTATCTTCCTTGTCAGAAGCAGAGAAGTTTCTTGGAGAAGTATCAGGTTATAATATTCAGGTTGAAAACTTGGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGGTACTACAAGATCCCTAGTTATATTGAATCAAAGCTACTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGACGTGTTCTCTTAGCAGATGAAATGGGACTAGGCAAAACATTGCAAGCCATTGCTGTAGCTTCATGCATTCAGGAGTCGTGGCCTGTTCTCATAATTGCACCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATCATATCTTCAAGTGCCAAAAACAGCATTCGTCTGGATGGACTATTCAACATCATCTCATACGATTTAGTGCCAAAGCTACAGAATATGCTTATGAAATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTCTGTATCCTGATGTATATAAGAATGTTCATGACTATGGTAACCGGTATTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTACACAACTTGATGAAGGCAACGGTGCTGATTCGCAGGCTTAAAAATGATGTTCTTACTGAACTTCCTGTAAAGCGCAGACAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGGAAATTAATGCTTTATTTCGAGAGTTGGAGATGGTAAAAACCAAAATTAAGGCTGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCGATACATGACTTCCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACGCCTGCTGCTTCCAGGCAACAATTGGTGACTGAGTTTCAGGAAAAAGATTCTATAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGTACAGTAATCTTTGCAGAATTGTCTTGGACTCCGGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACGGTTGATGACATCATATGGGACGTAGTACAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTAGAGGTCTCAGCTAGTCTGCCAGAGAATAGCCCTTCAAAGCAAAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACATGGATAGCCCTTCAAAGCAGAAAACACTGGACGAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGAACATGATCCCAACCCCAAACGTTCCCGAAACTGA 2133 0.413 MDVEDWDLSAEDLDSLERDAFQKIAQLRNPPPQSSPHQHHNSATTTTNHFPPKPLPNLRTQTVGASSQGARALPTSLKSRTNTALCVADEHSKKGLIKFSVKFFLHSSGNIAAKFQYDQVVVATFRKIPNSSWNAKERLWLFPLSSLSEAEKFLGEVSGYNIQVENLDPLVQRAIAAASAVPDLQDRYYKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIISSSAKNSIRLDGLFNIISYDLVPKLQNMLMKCDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHDYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKNDVLTELPVKRRQQVFLDLADKDMKEINALFRELEMVKTKIKAAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHDFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSASLPENSPSKQKTLDQFIRRPENMDSPSKQKTLDEFVRRCDNMDRLEHDPNPKRSRN* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01982 710 Coils Coil 451 471 - -
Phac3g01982 710 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 651 IPR001650 -
Phac3g01982 710 CDD DEXHc_HARP_SMARCAL1 199 422 - -
Phac3g01982 710 FunFam Chromatin remodeling factor18 172 446 - -
Phac3g01982 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 650 IPR027417 -
Phac3g01982 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 380 IPR014001 -
Phac3g01982 710 SMART helicmild6 525 608 IPR001650 -
Phac3g01982 710 MobiDBLite consensus disorder prediction 668 688 - -
Phac3g01982 710 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 696 - -
Phac3g01982 710 Pfam Helicase conserved C-terminal domain 509 608 IPR001650 -
Phac3g01982 710 MobiDBLite consensus disorder prediction 653 688 - -
Phac3g01982 710 FunFam Chromatin remodeling factor18 457 679 - -
Phac3g01982 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 422 IPR027417 -
Phac3g01982 710 SMART ultradead3 195 388 IPR014001 -
Phac3g01982 710 CDD SF2_C_SNF 495 619 - -
Phac3g01982 710 Pfam SNF2-related domain 217 477 IPR000330 GO:0005524|GO:0140658
Phac3g01982 710 Gene3D - 171 428 IPR038718 -
Phac3g01982 710 MobiDBLite consensus disorder prediction 27 72 - -
Phac3g01982 710 Gene3D - 461 697 IPR027417 -
Phac3g01982 710 ProSiteProfiles HARP domain profile. 93 169 IPR010003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01982 Phac-Chr3 22665531 22676575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01982 479 650 RAD5 or RAD16-like Gene Family AT1G05120 28.409 7.75e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac3g01982 SNF2_N 1.1e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01982 K14440 - gmx:100778246 1215.29