Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01947 ATGGGGTTCTACGTTGAAGACCCTCTCTCTGGCTTCACAATAGGGCAGGCCATATACGAGGCAGCTCTCATCATTGCAGTTCTGAGATGGGTCTTATGCTTCCTCTTCACACTCATCAACGACACAAGAACAAGCTCTGAAGACACCCCACCTCAATCTTGTCCTCAGACCACAAGAGACAGGGACACCACCCTTCTGCTCACCACCTTCGGGGAGATTAAGGAGAGGCTCCCACGCACAGAGGACACGTGTGCGGTTTGCCTCAACCAGCTTGAGGTGGAGGACGAGGTTCGGGAGCTCATGAACTGTTACCACGTGTTCCACAGAGAGTGCATAGACCGATGGTTGGAGCATGAGCACGAGAATCACAACCCCACCTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACAACTCCGCCACTTCTCAGCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGGGATGATTTGCTACCTTGTTAG 513 0.5341 MGFYVEDPLSGFTIGQAIYEAALIIAVLRWVLCFLFTLINDTRTSSEDTPPQSCPQTTRDRDTTLLLTTFGEIKERLPRTEDTCAVCLNQLEVEDEVRELMNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHNSATSQPPPQPSWAVERLLYLFGDDLLPC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01947 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Phac3g01947 170 SUPERFAMILY RING/U-box 79 137 - -
Phac3g01947 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 136 IPR013083 -
Phac3g01947 170 SMART ring_2 84 130 IPR001841 -
Phac3g01947 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 168 - -
Phac3g01947 170 Pfam Ring finger domain 82 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01947 Phac-Chr3 22295725 22296922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01947 1 167 C3H Transcription Factor Family AT5G20885 46.111 3.08e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01947 K16281 - gmx:100306203 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g01947 3 22295725 22296922 Phac3g01947 3 22295725 22296922 ECH