Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01834 ATGGGTGATTTCCAAGGTCCCTTCATATTGTCACCCCCTCCATCACCCTCTTCCTCGGATAAGTCCAGCACCACCATGTTATACTATGGCCTTGTAGTGGTGGGGGTTGCAGCTATGGCATTAGCCCTGTACAACTTCATCATCATCAGGAGAAGCAGGAGGCAATCACAGGTTGAGGAGGTGGTGGTGATGGAAAGTAGAATAGAGAACTTGAACTTGAACTTGGTGTCAAGCTTCAAGTACAAGAAAGAAGGAGTTGAGGGTTATGATGATGAATGTTCAGTTTGCTTATCGGGTTTTGAAGAAGGAGAAGAAGTTGGGAAGCTGCCACAGTGCAAGCACTGGTTCCACGCTCCATGCATACACATGTGGCTCTATTCTCACTTCGACTGCCCAATTTGTCGAACACCTGTTGTTCGTTTGTCGCACCACAACTCTGGTCCGGCATTGCTTGAATCCGCCACTGGTGTGTCCCTATGA 480 0.4813 MGDFQGPFILSPPPSPSSSDKSSTTMLYYGLVVVGVAAMALALYNFIIIRRSRRQSQVEEVVVMESRIENLNLNLVSSFKYKKEGVEGYDDECSVCLSGFEEGEEVGKLPQCKHWFHAPCIHMWLYSHFDCPICRTPVVRLSHHNSGPALLESATGVSL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01834 159 SMART ring_2 93 134 IPR001841 -
Phac3g01834 159 CDD RING-H2_EL5-like 92 135 - -
Phac3g01834 159 SUPERFAMILY RING/U-box 92 141 - -
Phac3g01834 159 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Phac3g01834 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 143 IPR013083 -
Phac3g01834 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 139 IPR044675 -
Phac3g01834 159 Pfam Ring finger domain 91 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01834 Phac-Chr3 20897449 20898587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01834 67 139 C3H Transcription Factor Family AT4G33565 53.846 9.47e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01834 - - vun:114177506 198.749