Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01826 ATGAAACCATTCTTCTTGTCGAATCGTCCTGATACCATGTACAATTGTTCCCAAGTTGATTTCAGTCATTCGATGGCCCATACTCCTTATCCTTGTGCTGATCCTTATTTTGCCAGTTCATTAGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATGATACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGCCCCATTTATGTCAATGCTAAACAATACCATGGTATACTGAGAAGGCGACAGTCTCGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTAGGCACCGTCACGCATTGAAGAGGGTTAGGGGCTCTGGTGGACGCTTTCTTAGTGCCAAACAGTTGCAAGAATCTAACTCTGAACATGTTGATAATACCCATTCAGGCCCGGGCCCTGTCAAGGTTTATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGGACAGCAGAAAATGCATGTATCACATTTACAGCCATCTCTGGCTTGACAAGCATGTCCAGTAATAGTCTCAATTTCAGGCAGCCAGAACACAACTTCTTGGGGAACTCCTCTAACAAGGGTGGATCATCACAATGCAGTGGGGGACTCAGTTTTGGTGGTGGAACTCGGCAATGTGCTTCTGTTGGCCGGTGA 708 0.4548 MKPFFLSNRPDTMYNCSQVDFSHSMAHTPYPCADPYFASSLVAYGPQAINQPQMIPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQESNSEHVDNTHSGPGPVKVYQKKDASEVESHPSRTAENACITFTAISGLTSMSSNSLNFRQPEHNFLGNSSNKGGSSQCSGGLSFGGGTRQCASVGR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01826 235 Gene3D - 74 136 - -
Phac3g01826 235 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Phac3g01826 235 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 185 IPR001289 GO:0003700|GO:0006355
Phac3g01826 235 MobiDBLite consensus disorder prediction 202 221 - -
Phac3g01826 235 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Phac3g01826 235 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Phac3g01826 235 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Phac3g01826 235 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Phac3g01826 235 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01826 Phac-Chr3 20845275 20849701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01826 24 146 CCAAT-HAP2 Transcription Factor Family AT1G17590 59.200 2.38e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phac3g01826 CBFB_NFYA 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01826 K08064 - gmx:100792905 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g01826 3 20845275 20849701 Phac3g01826 3 20845275 20849701 ECH
Phac5g02353 5 42202258 42206005 Phac3g01826 3 20845275 20849701 PCT