LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g01804	ATGTCCGCACCACCGTTGCCGAGATCGGTTGCCGTCGCCGTGAGTGGAGGCTCCAGCAAGGGTAGCCGGCGGGCCGTGCAGTGGGCGGTTGATAATCTCGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTTATCTCTCCAATCACTTCAATTGCCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCAGACGCAGACGTGTTTGCAGCTTATGTGGACGATGTGAAGCAAAAATCTGAACAAATCTTCGTTCCGTTCAAGAAACTCTGCGGCTCAAACACAATGGAAACAGTGCTGCTAGAAGATGACAATGTGGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGGAAGCTTAAAGGACCTGGAATACCAACTACCAGCCTAAGATGTGCTCCAGACAGCTGTGATGTGTATGTTGTAGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATTTGTCATCTTCACATTCTCATGAGACTAGCCCAACAAGTTACTTCATGTCTACTAAAGTAAATGAAGTAGACAATGAGGCTGGCATTGGCAGAGAAATGTCGGGAATCAGTTCATCCACAACAGAATCTAAAATCCTAAAGAATTTCAGATTTTTATCATTATCCGAGCATAGTTACATTGGTCTGCAAACATTTAGTCGCAGGGATTCTTTTGAAAATTCTACCAAAAATGATAATCCAGAAAACTGTGGAGATGATATTGAAATGATTAGCCTCCACTCTTTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAACAACAAGTGGAACGGCTGCAACTGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGTGGAGCTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTAAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAATCATACGAAAGGCAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATAAATTGCTCTCAAACGACAGGAGATACAGAAAGTACACCATGGATGACATCAAGATAGCGACAAAATTCTTTTCTGAGGACTTGATGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTGCATCACCCTAATATGGTTTTGTTAGTTGGAGCCTGTCCTGAGAATGGTTGCCTAGTTTATGAGTACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAACAAAAATAGAAAACCACCGCTTCCTTGGTTTTTTCGATTTCGCATAGTTTTTGAAATGGCTTGTGGACTTTCGTTCTTGCATAATTCGAAGCCAGAGCCGATTGTCCATCGAGATATAAAACCTGGCAACATTTTGTTAGACAGAAATTATGTGAGCAAAATTTCTGATGTTGGGCTGGCTAAACTCCTTGCAGAAGTCGTGCCTGACAATATTACAGACTACCGAGAATCAGTCCTTGCCGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTTCGACCAAAATCAGATGTATATGCATTTGGAGTTATAACTCTCCAATTAATAACAGGTCGCCATGCACGTGGGCTCATTTTGATTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGATTTTTTAGATTCATCAGCTGGAGATTGGCCATTGGATGAGACAGTGGAATTGGCTCAAATTGCTCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCGAAAGATTTTCTAATGCGGCAAATGCTAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTCACCTTTTGA	2292	0.418	MSAPPLPRSVAVAVSGGSSKGSRRAVQWAVDNLVPQADRFILVHVISPITSIATPTEEYIPVSEADADVFAAYVDDVKQKSEQIFVPFKKLCGSNTMETVLLEDDNVAEALLSFISESGVQTLVLGSDSSNFITRKLKGPGIPTTSLRCAPDSCDVYVVARDRIVSKLADLSSSHSHETSPTSYFMSTKVNEVDNEAGIGREMSGISSSTTESKILKNFRFLSLSEHSYIGLQTFSRRDSFENSTKNDNPENCGDDIEMISLHSFDSIASAQREQLVMQQQVERLQLELQNTIAMYKQVCVELVQAQNQALLLSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDKLLSNDRRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLVGACPENGCLVYEYLENGSLEDYLLNKNRKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITDYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLILIVEDAIRNGSFRDFLDSSAGDWPLDETVELAQIALKCTALRCRDRPELDTEVLPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF*	764

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac3g01804	763	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	692	761	IPR013083	-
Phac3g01804	763	Pfam	U-box domain	693	758	IPR003613	GO:0004842\|GO:0016567
Phac3g01804	763	ProSiteProfiles	U-box domain profile.	691	763	IPR003613	GO:0004842\|GO:0016567
Phac3g01804	763	Coils	Coil	335	381	-	-
Phac3g01804	763	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
Phac3g01804	763	Pfam	Protein tyrosine and serine/threonine kinase	414	665	IPR001245	GO:0004672\|GO:0006468
Phac3g01804	763	ProSitePatterns	Protein kinases ATP-binding region signature.	415	436	IPR017441	GO:0005524
Phac3g01804	763	Coils	Coil	268	288	-	-
Phac3g01804	763	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	140	-	-
Phac3g01804	763	SUPERFAMILY	Protein kinase-like (PK-like)	392	664	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g01804	Phac-Chr3	20678678	20683950	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g01804	1	759	Plant U-box Gene Family	AT5G57035	52.888	0.0	810

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Phac3g01804		PK_Tyr_Ser-Thr	1.3e-40	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g01804	-		-	vun:114178082	1379.39

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