LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g01791	ATGGGAGAAGAAGTGGCAAGAGTGAAAGCAGAGATGTTCGACGACGGCGAAAGCGATCGCCACGACGACGTTTTCAGCGAGAGCAAGGCCTCCGGGGTGACGGAAGAGGCAACGGCGGTTCACGTCAAAGAAGAGGTGGATGACGGCTCCGTTAACGGTTTCATGGATAAGATGCCGAAGCCGATGGAAGGGCTGCACGAGATGGGTCCCCCACCGTTCCTGAAGAAAACCTTCGAAATGGTGGAGGACCCTCACACTGACCCCGTTGTGTCCTGGAGTCAAACTCGCGATAGTTTCGTCGTTTGGGACTCCCACGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTAAAGAACATAAGGAGGAGGAGTAAGTACAACAGACTGCATCAGGGAGCTTTCAGTATGGTGAAGCCCGGCGTGGAGGCTGAAATGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACAAATGTTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGGCCCGCGTTTGTTGACCAGTTAATCCAAAAGATTAGGAGAAAAAGAGAGGTTGATGGTAACGACATGGTTAAGAGGCCTAAATTGATGGGAAACCCCTGCTATGTACCCTTCCCCAAGACCATGGGGACAACCCCTAATGTTGATTATAGACACCACAGTCATAAGCAATTCCCCTCAATGCAATCCGAGCTTGATGGATTTCTGTCTGAAACTGTGAACATCAGCAAGTTGGAGCACCCAACTCCCTCTCCTTTGGAAGATGAATTATGTAACTCTGTGCAAGGATTAAGGGCCCATGGTTGTTCTAGCGCAAATGCGCCAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTCTAGTTGATGAAGAACTAGATGTGAATGACTCAAATATCTATCTTGAATTAGAGGATTTGATCACTAAGCCAACGGATTGGTCTCTTGGATCTGCATTTGGATTGGTGGAGCAAACTAATTTGATTTGGACCTAA	1227	0.4719	MGEEVARVKAEMFDDGESDRHDDVFSESKASGVTEEATAVHVKEEVDDGSVNGFMDKMPKPMEGLHEMGPPPFLKKTFEMVEDPHTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHNNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNRLHQGAFSMVKPGVEAEMEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERVRCAEMKQYQMMFFLTRMARRPAFVDQLIQKIRRKREVDGNDMVKRPKLMGNPCYVPFPKTMGTTPNVDYRHHSHKQFPSMQSELDGFLSETVNISKLEHPTPSPLEDELCNSVQGLRAHGCSSANAPDASSAYHVMSEKLMRENSLVDEELDVNDSNIYLELEDLITKPTDWSLGSAFGLVEQTNLIWT*	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g01791	408	MobiDBLite	consensus disorder prediction	1	37	-	-
	Phac3g01791	408	Pfam	HSF-type DNA-binding	73	162	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g01791	408	PRINTS	Heat shock factor (HSF) domain signature	73	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g01791	408	PRINTS	Heat shock factor (HSF) domain signature	124	136	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g01791	408	PRINTS	Heat shock factor (HSF) domain signature	111	123	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g01791	408	SUPERFAMILY	"Winged helix" DNA-binding domain	69	162	IPR036390	-
	Phac3g01791	408	SMART	hsfneu3	69	162	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g01791	408	Coils	Coil	184	204	-	-
	Phac3g01791	408	ProSitePatterns	HSF-type DNA-binding domain signature.	112	136	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac3g01791	408	Gene3D	-	66	163	IPR036388	-
	Phac3g01791	408	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	59	289	IPR027725	-
	Phac3g01791	408	MobiDBLite	consensus disorder prediction	1	29	-	-
	Phac3g01791	408	FunFam	Heat shock transcription factor 1	66	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g01791	Phac-Chr3	20581609	20591066	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g01791	59	406	HSF	AT2G26150	40.282	3.36e-80	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Phac3g01791		HSF_DNA-bind	5.6e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g01791	K09419		-	gmx:100818430	679.093