Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01785 ATGGATGATGTGTATGCCCTCCCTCGAGCCCCCAGAACTGATTTTCTTCGCACTCTGCTCCAATCTTTTGGCTGCACTTATGTTTGTTTGTGGCAACATCACTCCAATTCATCCAATCGTTTGTTCTTCTTTGATGGTTTATACAATCTACCAAACAACCAACCAAGCTCTTCTTTAGGGACTGAAGCTGAAAGGCTTTTTCAACAGTATCGGGCTTTAACGTTTGATGTCAGTCATGAATGTGTTCCTGGAGTTGCTTTCAGGAATCAACTTCCCTACGTACAGCTCAAACTGTTGGATCTCCTACCACTCGCATCCACCCAAGTACAAAAACAATTCTTTCTGGAAGCAAGGATTGAGATGGCTGTTTTCATGGGGTGCAAAATGGGAGAAATTGAGCTTGGCTTCTCCAACATTTCTCAAGCTGACATTGAGACATCACTTAAGAATTTATTCCCGGAAGATTTCTATTTACGTTCCCAATCAATTGATCAGAATCCATATTCATCATCATCATCTTCTTTCATATCAATTTCTACAGATACCTCTAATCAACATTCATCTCTATCACTCGATATTCCAGGAATTTCCCACTCCAACTTTCCTGAAGCCCTTGGTGTGGCTCCCACACAACCTACTCCTCACCAACAAACTATTCAACCATTATCTCAACTCATTCCATTTCCAAGCTATTTACGCACACCAGAGGGTGAACATGAACAAATAATAAGAACACTAATCCAAGTCATGTCTCCAACTTCCCTGCACCATCAACCCCAACCCATTTTGCCTCATAATTCTGCAATACACCCTGCAGCTGCCGGTTTCACGAGACATAGACCAGATATGATAAACCCAAATACAAAACCCCACATGGAGTCCAATTCTAGCAGGCAAAACCTGCAGAATACATCATTTCCATTGTTTAAAAACTTCAATTCAACGAGGATGAGAGAATGCAATCCTATTGAAGCAACTCATCCCATTAGTTCCCAGAAGTACTATCACACGATATCGGAAAGAAAACGTCGTGAAAAACTCAGTGAGTGTTTTCAGGAACTCAGTGCACTTCTTTATCCGGAAACTAAGAAAAGTAAAGCGACGATCCTTAAAGCAGCACAGGAGACAATAATATCATTGATGGCTGATATTGAAAAGCTTAATAACATGAGAAAACAGCCGCTGATGACAGATTTGTCAAGCGAAGGTAGCAGTAGTAGGGCTGAAAACAAAGGTAGGTTCTCTGATGGAAGATTGAATGTTCGGGTTTGGCATGTATCAGAATCAAGTTCATCAGACAAGCAAATGGTGGAGTTGCAAGTGACTGTGAGAGAACAAAGCTGTCACATTGATGTATTGATTACCATATTGGAGTTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATATTACAGAAGGAGGGACAACCATTGACGAATTAACCTTCAGGCTGAGGATTATTGAGGTATGTATCCCAAACACATTCCAGTAA 1512 0.4107 MDDVYALPRAPRTDFLRTLLQSFGCTYVCLWQHHSNSSNRLFFFDGLYNLPNNQPSSSLGTEAERLFQQYRALTFDVSHECVPGVAFRNQLPYVQLKLLDLLPLASTQVQKQFFLEARIEMAVFMGCKMGEIELGFSNISQADIETSLKNLFPEDFYLRSQSIDQNPYSSSSSSFISISTDTSNQHSSLSLDIPGISHSNFPEALGVAPTQPTPHQQTIQPLSQLIPFPSYLRTPEGEHEQIIRTLIQVMSPTSLHHQPQPILPHNSAIHPAAAGFTRHRPDMINPNTKPHMESNSSRQNLQNTSFPLFKNFNSTRMRECNPIEATHPISSQKYYHTISERKRREKLSECFQELSALLYPETKKSKATILKAAQETIISLMADIEKLNNMRKQPLMTDLSSEGSSSRAENKGRFSDGRLNVRVWHVSESSSSDKQMVELQVTVREQSCHIDVLITILEFLERVQNVTLISTNTNLHITEGGTTIDELTFRLRIIEVCIPNTFQ* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01785 503 Gene3D - 330 401 IPR036638 GO:0046983
Phac3g01785 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Phac3g01785 503 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 105 494 IPR044658 -
Phac3g01785 503 SMART finulus 337 386 IPR011598 GO:0046983
Phac3g01785 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 394 IPR036638 GO:0046983
Phac3g01785 503 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Phac3g01785 503 Coils Coil 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01785 Phac-Chr3 20535335 20537993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01785 12 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 33.202 1.01e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g01785 HLH 6.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01785 - - pvu:PHAVU_003G135700g 843.188