Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01724 ATGGATAACGGTGATCTTGGTGTAGGCATGGATAGGTTTAAGCAGGTGGAGAAGAAGAAAAACACAGGGAGGAAGAAGATCGTGATAGAGAAGATTGAGAAATCCAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAGTAGGGCTGTTCAAGAAAGCGAGTGAACTGTGCATTTTGTGCAATGTTAATGTAGCCATAATTGTGTTTTCTCCTGCTGAAAAGTTGTTCTGCTTTGGGCATCCAGACGTGGAAGCCATTGTTGGTAACTACCTGAAGGGAGCGAAAGTGTTGGTACCATCAGTGTCAAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGGAGGCAATGAGGAATTTGGCGATGGAAAAGAAGAATCTGACAGAGACTGAAGCATTGGTTAAGGGTATGACCAGAAGGTGGTGGGAGGACCCCATTGATCAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTCTCACTTTATGAGTTGAGGAAGAAATTAACCGAAAGGGCTGGTAAATTGTTCATGCTTTCAATTCAATGA 546 0.4286 MDNGDLGVGMDRFKQVEKKKNTGRKKIVIEKIEKSSNKQVTFSKRRVGLFKKASELCILCNVNVAIIVFSPAEKLFCFGHPDVEAIVGNYLKGAKVLVPSVSRGSYEESNMQYEEAMRNLAMEKKNLTETEALVKGMTRRWWEDPIDQMSERELEQFMVSLYELRKKLTERAGKLFMLSIQ* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01724 181 SUPERFAMILY SRF-like 23 92 IPR036879 GO:0003677|GO:0046983
Phac3g01724 181 Coils Coil 106 133 - -
Phac3g01724 181 PANTHER MADS BOX PROTEIN 24 170 - -
Phac3g01724 181 FunFam Agamous-like MADS-box protein AGL62 34 97 - -
Phac3g01724 181 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Phac3g01724 181 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Phac3g01724 181 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Phac3g01724 181 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Phac3g01724 181 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Phac3g01724 181 Gene3D - 35 103 IPR036879 GO:0003677|GO:0046983
Phac3g01724 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01724 Phac-Chr3 20015366 20015911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01724 19 180 Type I MADS-box Gene Family AT5G60440 38.333 3.98e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac3g01724 SRF-TF 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01724 - - vra:106766532 246.899