Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac3g01668 | ATGTCTCTCAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTTGCAGTTGATGCTGACGAGGGTCGTCGGCGAAGAGAGGATAATATGGTTGAGATCCGAAAGAGCAAGCGTGAAGAGAGCTTGCAGAAGAAACGTCGCGAAGGTCTCCAAGCTCAGCAACAGTTTCCAACTCCTCTCCAGGCTTCCACTGTTGATAAGAAGTTAGAGAGTCTTCCGGCGATGGTTGCTGGAGTTTGGTCGGATGATAATAATCTTCAACTTGAAGCCACTACGCAATTTCGCAAGCTGCTTTCAATTGAACGAAGCCCTCCAATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCGCGTTTTGTTGAGTTTCTTGTCAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTTACAAACATTGCATCTGGAACTTCTGAGAACACTAAGGTGGTCATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTGCTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGCGCCCTCGTCCCACTATTGGCTCAGTTGAATGAACATGCAAAACTTTCAATGTTAAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCACAGCCTCCATTTGAGCAGGTGAGACCAGCACTTCCAGCACTTGAGCGCTTGATCTTCTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTTTCTGACGGCCCGAATGACAAGATTCAAGCTGTTATTGAGGCACGTGTATGTCCCACATTGGTGCAGCTACTCTTGAACCAATCTCCCTCGGTGCTAATTCCTGCTCTTCGTACTGTGGGAAATATTGTAACTGGAGATGACATGCAAACTCAGTCTATTATCAATCATGGTGCGCTCCCTTGCCTTCTGAACCTGTTGAATCATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAGATACAGTCTGTTATTGAAGCTGGTCTGGTTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATCAAAAAGGAAGCTGCCTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGACCAGATTAAGTACTTGGTTGCTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGTCCGGATCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCCGAGAAGAGCCTAGGTAACACTGGAGATGTCAACTTGTATGCACAGATGATAGACGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATCTACGAAAAGGCTGTTAAAATTCTTGAAACGTACTGGTTGGAAGATGAAGACGAGACCCTACCTTCAGGAGAGGGTGCTCAACCTGGTTTTGCTTTTGGAAGTGAACTCCCAGTCCCGTCTGGTGGATTCAACTTCAGCTGA | 1590 | 0.4597 | MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQASTVDKKLESLPAMVAGVWSDDNNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLIFSNDEEVLTDACWALSYLSDGPNDKIQAVIEARVCPTLVQLLLNQSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPCLLNLLNHNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGEGAQPGFAFGSELPVPSGGFNFS* | 530 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac3g01668 | 529 | Pfam | Atypical Arm repeat | 457 | 501 | IPR032413 | - | |
| Phac3g01668 | 529 | MobiDBLite | consensus disorder prediction | 23 | 58 | - | - | |
| Phac3g01668 | 529 | SMART | arm_5 | 359 | 399 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 189 | 231 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 148 | 188 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 274 | 314 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 233 | 272 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 402 | 442 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 316 | 357 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SMART | arm_5 | 105 | 146 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Gene3D | - | 11 | 50 | IPR036975 | GO:0006606 | |
| Phac3g01668 | 529 | PANTHER | IMPORTIN ALPHA | 12 | 499 | - | - | |
| Phac3g01668 | 529 | Gene3D | - | 73 | 496 | IPR011989 | - | |
| Phac3g01668 | 529 | MobiDBLite | consensus disorder prediction | 23 | 50 | - | - | |
| Phac3g01668 | 529 | FunFam | Importin subunit alpha | 73 | 496 | - | - | |
| Phac3g01668 | 529 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 116 | 159 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | SUPERFAMILY | ARM repeat | 6 | 501 | IPR016024 | - | |
| Phac3g01668 | 529 | ProSiteProfiles | IBB domain profile. | 1 | 58 | IPR002652 | GO:0006606|GO:0061608 | |
| Phac3g01668 | 529 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 159 | 201 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | MobiDBLite | consensus disorder prediction | 501 | 529 | - | - | |
| Phac3g01668 | 529 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 370 | 398 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | PIRSF | Importin_alpha | 2 | 528 | IPR024931 | GO:0005737|GO:0006606|GO:0061608 | |
| Phac3g01668 | 529 | Pfam | Importin beta binding domain | 12 | 95 | IPR002652 | GO:0006606|GO:0061608 | |
| Phac3g01668 | 529 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 327 | 370 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | FunFam | Importin subunit alpha | 11 | 50 | - | - | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 106 | 146 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 190 | 231 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 148 | 187 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 275 | 313 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 403 | 440 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 244 | 271 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 317 | 357 | IPR000225 | GO:0005515 | |
| Phac3g01668 | 529 | Pfam | Armadillo/beta-catenin-like repeat | 359 | 398 | IPR000225 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac3g01668 | Phac-Chr3 | 19441988 | 19446768 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac3g01668 | 131 | 391 | U-box Gene Family | AT3G46510 | 24.809 | 2.57e-10 | 61.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac3g01668 | K15042 | - | gmx:100808498 | 983.786 |