Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01624 ATGGATAACCATAATTTTTCTTCAGGCATTGATGCGTTTAACCAGCAGAAGAAAAAGACTGGGCGGAAGAAGATTGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAAAAAGCGAGTGAACTGTGCATTTTGTGCAATGCCAGTGTGGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCGGTCACCCAGATTTGGAGGGCATTGTTGAAAGCTACCTGAAAGGTGACAAAGTGTTTGAACCACTGGAGTCAAGGGAGAGATCAGTGTCGTATGAAGAGTGCAACAAGCAATACGAGGAGGCAATGAAGAAGTTGGAGTTGGAAAAGAAGAATCTGAGAGAAACTGAAACTCTGGTTAATGGGTTTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTGAAAGTGAGTTGGAACAGTTTATGGTGTCTGTTTATGAGTTGAGGAGAAAATTAGCCGAAAGGGGTGGTGGATTGTTGATGCAATCAATGCTATAG 549 0.4189 MDNHNFSSGIDAFNQQKKKTGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCILCNASVAIIVFSPAEKLFCFGHPDLEGIVESYLKGDKVFEPLESRERSVSYEECNKQYEEAMKKLELEKKNLRETETLVNGFNRRWWEDPIDQMSESELEQFMVSVYELRRKLAERGGGLLMQSML* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01624 182 SUPERFAMILY SRF-like 21 90 IPR036879 GO:0003677|GO:0046983
Phac3g01624 182 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Phac3g01624 182 PANTHER MADS BOX PROTEIN 22 169 - -
Phac3g01624 182 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Phac3g01624 182 Coils Coil 104 134 - -
Phac3g01624 182 Gene3D - 33 104 IPR036879 GO:0003677|GO:0046983
Phac3g01624 182 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Phac3g01624 182 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Phac3g01624 182 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Phac3g01624 182 FunFam Agamous-like MADS-box protein AGL62 32 96 - -
Phac3g01624 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01624 Phac-Chr3 18677725 18678273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01624 17 167 Type I MADS-box Gene Family AT5G60440 40.606 1.76e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac3g01624 SRF-TF 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01624 - - vra:106766532 285.419