Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01622 ATGGAAAACGACGAAGGTAAGGAAATCGAAGCTAATGATTACGAGCTCAGCGGCAAGATAATGCTTACCGCCATTGTCGCTCTCTTCGTCGTCATCATCATAATGCTTTGCCTCCACGTCTACGTTCGTTGCAGCCTCGTTCGAGCTCGCCGCCGGCAACAACTTCGCCGAAGAAGCAACCGCCCGCAGTTCGTGTTCTACATCGACCCCGCCGCCCGCACTGCCCTCACCTCACGTGGCCTCCACCCCTCCGTCATCTCCACGCTCCCGGTCTTCACCTTCTCTGCTTCCACCCAACCATCGGAATGCGCGGTTTGTTTGTCGGAGTTTGAGAACGGGGAAACGGGTCGGATCTTACCCAAATGCAATCATAGTTTCCACACTGAGTGCATCGACATCTGGTTCCAGTCCCACACCACCTGTCCGCTTTGCAGGGCGCCTGTCGAGGCCATTGCCGACCGAGAAACCCGATCTGAGATGGCTGTTGTGTGTGAACCTGAGCCGGTTGGGGCAGAGGTTGACCGGTCTATACCAGTTGGCTCTTCTTCTTCTTCTTCTTCTTCTGCGTTGCATAACGAGAGTTTGGGGCGCGAGACGGAGTCGTCATTTCGGTCGCCGGTGAGTCGGATAGTGTCGTTCAAGAGGATTCTGAGCAGAGAGAAGAAGGGAAGCGTTTCGGGGTGTGTGGTGGGAGGGTGCAGCTCCATGACCGAGTTAGATGCAGAACGAGGAGAGTCTGACTCGGTGAGTTGTTGA 756 0.5556 MENDEGKEIEANDYELSGKIMLTAIVALFVVIIIMLCLHVYVRCSLVRARRRQQLRRRSNRPQFVFYIDPAARTALTSRGLHPSVISTLPVFTFSASTQPSECAVCLSEFENGETGRILPKCNHSFHTECIDIWFQSHTTCPLCRAPVEAIADRETRSEMAVVCEPEPVGAEVDRSIPVGSSSSSSSSALHNESLGRETESSFRSPVSRIVSFKRILSREKKGSVSGCVVGGCSSMTELDAERGESDSVSC* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01622 251 CDD RING-H2_EL5-like 102 145 - -
Phac3g01622 251 MobiDBLite consensus disorder prediction 173 201 - -
Phac3g01622 251 MobiDBLite consensus disorder prediction 177 201 - -
Phac3g01622 251 SUPERFAMILY RING/U-box 97 152 - -
Phac3g01622 251 Pfam Ring finger domain 102 145 IPR001841 -
Phac3g01622 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 151 IPR013083 -
Phac3g01622 251 SMART ring_2 103 144 IPR001841 -
Phac3g01622 251 FunFam E3 ubiquitin-protein ligase ATL6 70 151 - -
Phac3g01622 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 193 - -
Phac3g01622 251 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01622 Phac-Chr3 18588974 18590176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01622 14 248 Rapid Response to Elicitors AT3G16720 43.416 7.07e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01622 - - gmx:100800859 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g01622 3 18588974 18590176 Phac3g01622 3 18588974 18590176 ECH
Phac3g01622 3 18588974 18590176 Phac9g04135 9 39257614 39259018 PCT