Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac3g01547 | ATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCACGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACCGCGGAGAAGCGTGGTGGCTTGTGCCGGAGTGTGCCGCACCTGGAGACTCATCGTCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTCTAGCTGCGCGTAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATGCGGATGATATGTCCAGGGAAAGCAGTGCCCACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACTATCTACGATAGCCAACTGCCTCATGCAAAGGCAAAGATGACAAAAAGTAGCTCCACTAGGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTACAGGCAACTACCCAGTTGCCCATATCTCATATGAATTGAATGTATTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGATACCATTCCTGCTTCTGCTATTGAACCAGAATGGGTAGCTCCTTCACAGACCAGTTATTCTGCTAGTAACATAAGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATCTGGAAAACTCCATATCTGGAGAGCAGAACAATAAAAAAGATGACGTTCTAGTGTTGAAAAATAAGGCTGCCAGGTGGCACGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGACAGTCAATGGACATGCTGAACCACAAGAGGATGACGTCGTCCTCCAATTTGGAAAAGTTGGGAAGGACATGTTTACAATGGATTACCGTTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACGGTTGCTTGCGAATGA | 1083 | 0.47 | MDDGLEQSWWANMPHELLREVLLRIESSEAKWPPRRSVVACAGVCRTWRLIVKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDADDMSRESSAHIGKLRSNFLGTKFTIYDSQLPHAKAKMTKSSSTRLVNPKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDTIPASAIEPEWVAPSQTSYSASNISTSFPFFQTNSTHLENSISGEQNNKKDDVLVLKNKAARWHEQMQCWCLNFHGRVTIASVKNFQLAALTVNGHAEPQEDDVVLQFGKVGKDMFTMDYRYPISAFQAFAICLSSFATTVACE* | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac3g01547 | 360 | FunFam | Tubby-like F-box protein | 67 | 360 | - | - | |
Phac3g01547 | 360 | CDD | F-box_AtTLP-like | 10 | 54 | - | - | |
Phac3g01547 | 360 | Pfam | Tub family | 71 | 355 | IPR000007 | - | |
Phac3g01547 | 360 | Pfam | F-box domain | 10 | 56 | IPR001810 | GO:0005515 | |
Phac3g01547 | 360 | SUPERFAMILY | F-box domain | 4 | 53 | IPR036047 | GO:0005515 | |
Phac3g01547 | 360 | SUPERFAMILY | Tubby C-terminal domain-like | 59 | 360 | IPR025659 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 125 | 141 | IPR000007 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 272 | 289 | IPR000007 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 338 | 360 | IPR000007 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 141 | 165 | IPR000007 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 290 | 306 | IPR000007 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 190 | 217 | IPR000007 | - | |
Phac3g01547 | 360 | PRINTS | Tubby superfamily signature | 317 | 336 | IPR000007 | - | |
Phac3g01547 | 360 | Gene3D | Tubby Protein; Chain A | 68 | 360 | IPR025659 | - | |
Phac3g01547 | 360 | PANTHER | TUBBY-RELATED | 7 | 357 | - | - | |
Phac3g01547 | 360 | ProSitePatterns | Tub family signature 1. | 290 | 303 | IPR018066 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac3g01547 | Phac-Chr3 | 17711761 | 17715432 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac3g01547 | 3 | 360 | TUB Transcription Factor Family | AT2G47900 | 65.289 | 1.26e-175 | 492 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Phac3g01547 | Tub | 2.9e-108 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac3g01547 | K19600 | - | gmx:100794141 | 623.624 |