LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g01545	ATGGGGTGTGTGTTTGGGAAAGGAGCGTCAAGGAGGAAAGAGGAAGTGAAAGTTGAAAGAGCAGAAGAGGGTGCTGTTCAGAACGGTGGGAATGTTAAGGAGGGTGGAGAAGAGGAAAAGAGCAAGCCCCCAAAAGGGGAGAGAAGGCGATCCTCGAAGCCGAATCCGAGGTTAAGCAATCCACCTAACCATGTGCATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATAAATGGGTTGATCCCTAGAAGAGCCGACACTTTTGAAAAGCTGAATAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCAAAGGATACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCGGAGAGTGTCAAATTCATGGCCAGAGAGATCCTTATTCTGCGCCATCTGGATCATCCCAACGTTGTCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTACAAGTCCAACAGTAAAGTTCACAGAGTCTCAGGTTAAATGTTATATGCATCAGCTACTTTCTGGACTGGAACACTGTCACAACCGTCATGTGTTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAACGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCAAAAGCACCCTATGACCAGCAGGGTGGTTACTTTATGGTATCGACCTCCAGAGCTTCTCCTTGGAGCTACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAGCTACATAAGATATTTAAACTTTGTGGTTCTCCATCTGATGAATATTGGAAAAAGTCAAAGCTGCCACATGCTACCATTTTTAAGCCCCGACAATCATACAAGAGGTGCATAGAAGAGACATTTAAGAATTTCCCAGCATCATCTCTGCCTCTAACTGAGACCCTTCTTGCAATCGATCCAGCTGAACGCCAAACTGCCACAGCTGCATTACATAGTGAATTCTTTACTACAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAACTGCGGGATGAAGAAGCTAGAAGATTGAGGGCTGCTAACAAAACTAATGCTGGTGTGAAGAAATCACGTCCACGTGATAGAGGTGGAAGGGGAAATCCAATTCCAGATTCCAATGCTGAGTTGCAAGCAAATATTGATAGATGGCGACTGGTAACACATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCTCCTCATGAAGATGGAACTCTGGGCTATCCTTTGGGTTCTTCACGTCACATGGATCCAATTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAATCAAATATCCAGACCTGGTCTGGTCCATTAATGGAAACTAGTGTGGATGCACCAAGAAGAAAGAAGAAAATGGCAGGGAATGGGAATGGGCGCACACATTCAAAGAAGGACTCTTATAGATAG	1644	0.4471	MGCVFGKGASRRKEEVKVERAEEGAVQNGGNVKEGGEEEKSKPPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLIPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLATSPTVKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILRIADFGLASFFDPNQKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPRQSYKRCIEETFKNFPASSLPLTETLLAIDPAERQTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAANKTNAGVKKSRPRDRGGRGNPIPDSNAELQANIDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSRHMDPIFDPPDVPFSSTNLSYPKSNIQTWSGPLMETSVDAPRRKKKMAGNGNGRTHSKKDSYR*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g01545	547	MobiDBLite	consensus disorder prediction	415	446	-	-
	Phac3g01545	547	SUPERFAMILY	Protein kinase-like (PK-like)	92	386	IPR011009	-
	Phac3g01545	547	FunFam	probable serine/threonine-protein kinase At1g54610	180	421	-	-
	Phac3g01545	547	ProSitePatterns	Protein kinases ATP-binding region signature.	103	126	IPR017441	GO:0005524
	Phac3g01545	547	Gene3D	Phosphorylase Kinase; domain 1	86	179	-	-
	Phac3g01545	547	MobiDBLite	consensus disorder prediction	1	68	-	-
	Phac3g01545	547	PANTHER	CELL DIVISION PROTEIN KINASE	95	385	-	-
	Phac3g01545	547	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	217	229	IPR008271	GO:0004672\|GO:0006468
	Phac3g01545	547	MobiDBLite	consensus disorder prediction	8	22	-	-
	Phac3g01545	547	SMART	serkin_6	97	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g01545	547	MobiDBLite	consensus disorder prediction	461	547	-	-
	Phac3g01545	547	ProSiteProfiles	Protein kinase domain profile.	97	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g01545	547	CDD	STKc_CDK9_like	97	381	-	-
	Phac3g01545	547	MobiDBLite	consensus disorder prediction	33	54	-	-
	Phac3g01545	547	FunFam	probable serine/threonine-protein kinase At1g54610	84	179	-	-
	Phac3g01545	547	Pfam	Protein kinase domain	97	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g01545	547	Gene3D	Transferase(Phosphotransferase) domain 1	180	421	-	-
	Phac3g01545	547	MobiDBLite	consensus disorder prediction	497	518	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g01545	Phac-Chr3	17681014	17686051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g01545	92	419	Core Cell Cycle Gene Families	AT5G10270	51.744	1.21e-115	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Phac3g01545		Pkinase	1.2e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g01545	K08819		-	gmx:100791757	994.571