Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01440 ATGTCAGAAATGCGGGTGTCCGAGCTTCACTTGAAAAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTTCTCAGAGATCCTGGCACCACATCTTCTTGGAAGTCACCACTAAGTTCATCAAGATCCGTGGCTGCATGGAACAGAGACAGTGGAAGTAGAAGGTTCAGCACCACTTCTCAACTTGCCAACAATGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAGGAGAGGGAGAAAAAGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAATGAGGAAGAAGATGACGATGATGGTGATGACGGGGGATCATCATCGCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGTGACTCTAAGAGTGATACATACCTGGCTGCTGGTGGTACTGGTGGCGGTGGCGGCACTCGTTCTTCTATTTTCAGATGTGGGGATGCTAATCTTGTTTCGAGAAGAACCGTCCCCATTAAGAAAAAGAGTAAGAAAAATAACCCTCATTTAGATTTTTTAGCAAAGTGTCAACAGCATAGACAAACGAATCCAGGAAGAAATTTTGTGAGTTCTTCGAAGGCATTGCTAGAGGGGCATTCTTCTCTGCCTTTTTTTAGCAGGGATGACTCTGTTGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCAATTTCGGGGACTTCCCCTTTGCTCTTCAAACTCAGGCAAAAAAATTGGTCACGCTCTTCGTCAAAGTTTTTGAGAAGAAGTCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACTTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGCTATTCTCCCTCACTGTCCGACACGTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCCAGACACCGCAGATCGGTTTCGGCCTCTCAGAAGAGAAGACTTTCTCAGAGGAGTGCTCGTGGAGTCATTCCATTACTCACAAACAGTGGTGACGTTAGAGAAGGGTCGTCTGTGGGAACCGGCCGGAGCGATGATGAACTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAAGAGGAGGGAACGCCGGAGAATAGTCGCTGTTTCAGTCAAAAGTATAGGCCAATGTTCTTTGGTGAACTGATTGGCCAGAATATTGTTGTTCAGTCACTTATCAATGCTGTTTCCAGGGGACGCATTGCTCCTGTTTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACGTCAACCGCTAGGATATTTGCTGCTGCCTTGAACTGTGCAAGTCCTGATGAAAGTAAACCTTGTGGCTACTGCAGGGAATGCACTGATTGTATTTCTGGTAAGAGCAGTAATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTAAAAAGATTGTCAACCGGGTCATCTTCAGCCTCACCTCAATATACAGTTTTCGTTATTGAGGAGTGTCACTTGTTGCCCTCCAAGACATGGCTGGGATTTCTTAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTACCACGGACAATACAATCTCGTTGCCAAAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTATGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCGCTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAGCTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTGGCAATGTCATCGGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTGGCAGGCCTTATCATGGACATAATTGCTGGGTCATATGCAGTCATTGATACCAGACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGAACATCCAGTGAACGCTGTACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCCACACCTTCTCCTGATCTCACGCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGATGTTACCTCTTGCACGCACAAGTCAGACCCTCAATATGTGCCTCGAAAGTCAGCATACACCGGCTCCCAGCAAAAGGCGGTAAATGATGATTCCAACCATCAAAAGGAATCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCGTCAAACAGCCCAGTCTTAGATGATGGCTCAACAGTTGTATCATCTGATGATCTTATGGTGGTGAATACAATGTATAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGAGAAGTGTCACTCTAAGACATTGAGGCAGCTGCTGCACCATCACGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATATTGCTTTTGGTGACGCAGATATTAAAGTTCGGGCTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCCGAATAATCCATTTGGCAGATGGGGAAGGTGAAAACAAGGTTAATCTAACAGGTGTAAAGCAGGGTGAGTCAACAGTGGCTTCTGAGAAGGAGCAAAGACAAGGTCATGTGAATGGAACGGAGTCTTATTCTGGTTTGCCTCCTTTACTGGATAGAAACCTTCAATCTAGGACTGCTTCATCGGATGTCTTGGGTGAAGGAAATGGTGGGAGGGAGAGGAGACAGGATAATCCAATGCATAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCATGGTTACAGGCCGTAGAGAAAGGTTCCCCTGGATCATTAAGTCGTTTGAGACCCGAGAAGAATCAAGTGCTGCCACAGAATGGTGTAGACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGACCCCAATAATGAACTCAAAGTTTTGACCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGACTGGTAGAAAGGCAGATCGTTTTCCCATGTCCCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTCCTGGAAAAGACCATCCGGGATATGAATCGGGGTCAGGAGCTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCGAAGCCGAGAAGGGTAATGAAGGTGAAAGGTGGCACCCCAGTTAGAGCGCGCAGAGGTGCAGGTTTTACGGTGTTTGGTGACTGCGGTAAGCCAAAGAGAAGGGAGCGGAAAAGATAA 3771 0.4492 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRFSTTSQLANNEKEKEKEKEKEKEKEKEREKKVFLYNWKNYKSSSEKYNEEEDDDDGDDGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAGGTGGGGGTRSSIFRCGDANLVSRRTVPIKKKSKKNNPHLDFLAKCQQHRQTNPGRNFVSSSKALLEGHSSLPFFSRDDSVEFSDDTEDYTNSEGVRPISGTSPLLFKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASQKRRLSQRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEEEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECTDCISGKSSNLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTVFVIEECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIMTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTRPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERCTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPRKSAYTGSQQKAVNDDSNHQKESKIEGFSLKSKPSNSPVLDDGSTVVSSDDLMVVNTMYRCIDSGKLCDIWVHCIEKCHSKTLRQLLHHHGKLVSVCEVEGVLVAYIAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLADGEGENKVNLTGVKQGESTVASEKEQRQGHVNGTESYSGLPPLLDRNLQSRTASSDVLGEGNGGRERRQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDPNNELKVLTLKNGRVPQKDQTGRKADRFPMSPSLLHDNSLATIPGKDHPGYESGSGAGGCGFLCWNKSKPRRVMKVKGGTPVRARRGAGFTVFGDCGKPKRRERKR* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01440 1256 MobiDBLite consensus disorder prediction 25 83 - -
Phac3g01440 1256 Pfam DNA polymerase III subunits gamma and tau domain III 702 820 IPR022754 GO:0003887
Phac3g01440 1256 FunFam DNA polymerase III subunit gamma/tau 469 647 - -
Phac3g01440 1256 Gene3D - 465 646 IPR027417 -
Phac3g01440 1256 Coils Coil 1252 1256 - -
Phac3g01440 1256 SUPERFAMILY post-AAA+ oligomerization domain-like 719 820 IPR008921 GO:0003677|GO:0006260
Phac3g01440 1256 MobiDBLite consensus disorder prediction 98 158 - -
Phac3g01440 1256 NCBIfam DNA polymerase III subunit gamma/tau 473 822 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Phac3g01440 1256 MobiDBLite consensus disorder prediction 403 423 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 850 882 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 1074 1088 - -
Phac3g01440 1256 CDD HLD_clamp_pol_III_gamma_tau 648 711 IPR045085 -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 29 63 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 116 133 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 1166 1187 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 64 83 - -
Phac3g01440 1256 Coils Coil 59 87 - -
Phac3g01440 1256 Coils Coil 781 811 - -
Phac3g01440 1256 FunFam DNA polymerase III subunit gamma/tau 649 711 - -
Phac3g01440 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 695 IPR027417 -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 825 839 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 1056 1070 - -
Phac3g01440 1256 CDD AAA 487 645 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 897 911 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 1031 1088 - -
Phac3g01440 1256 Pfam DNA polymerase III, delta subunit 488 648 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 406 423 - -
Phac3g01440 1256 Gene3D - 650 711 - -
Phac3g01440 1256 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 476 886 - -
Phac3g01440 1256 MobiDBLite consensus disorder prediction 825 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01440 Phac-Chr3 16032269 16039484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01440 469 763 Core DNA Replication Machinery Family AT1G21690 23.684 6.46e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01440 - - gmx:100814391 2117.81