Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01437 ATGGATATTTTCAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACAATCTTCGAACTTGTGACTGGAAGTGTTAAGCAATCAAAGGATCAACCAGCTGCTCACAACAATGGTAGCAAATTCAAATCAAGTGGAAAGGTGTCTCGTCAGTCTGAGTCTCAAGCCAAGGGGATGAAGATGTCTGCACCACCTAAAGAGGAGGATGAGAGTGGAGAGGAAGAAGAAGAAGATGATGAACAAGGTGCAACATGTGGTGCTTGCGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCCGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCCAGCTGCAGTAACAAGAGGGTTAGAGTTTGA 417 0.4269 MDIFRKRLFQMINDLPTIFELVTGSVKQSKDQPAAHNNGSKFKSSGKVSRQSESQAKGMKMSAPPKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01437 138 ProSiteProfiles Zinc finger PHD-type profile. 82 134 IPR019787 -
Phac3g01437 138 CDD PHD_AL_plant 85 134 IPR044104 -
Phac3g01437 138 MobiDBLite consensus disorder prediction 26 85 - -
Phac3g01437 138 FunFam PHD finger alfin-like protein 77 133 - -
Phac3g01437 138 Pfam PHD-finger 85 134 IPR019787 -
Phac3g01437 138 MobiDBLite consensus disorder prediction 68 83 - -
Phac3g01437 138 MobiDBLite consensus disorder prediction 26 58 - -
Phac3g01437 138 ProSitePatterns Zinc finger PHD-type signature. 85 131 IPR019786 -
Phac3g01437 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 133 IPR013083 -
Phac3g01437 138 PANTHER CPG BINDING PROTEIN 5 137 IPR045104 GO:0006355|GO:0042393
Phac3g01437 138 SUPERFAMILY FYVE/PHD zinc finger 73 135 IPR011011 -
Phac3g01437 138 SMART PHD_3 84 132 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01437 Phac-Chr3 15998971 16003879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01437 5 135 Alfin-like Transcription Factor Family AT1G14510 74.046 9.31e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac3g01437 PHD 5.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01437 K26274 - gmx:100807826 256.529