Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01397 ATGTATCGCTTGGGCGGCTCTAGCGTTACCTCTTCTGTCGAATCCAATTTACCCTCTTCAGCAAAAATCTTCGTCAAAGGGCTACCTCACTCAGCCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGGGAAGTTAATTTAGTCCAGCTTCCAATAGATGAAGAATCTGGACAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCCCAACTGGCTATTCAAGAGATGAATGGAAAGTTTTTTGATGGCAGATTTATTTATGTTACAATTGCAAAGCCTGGTTCATCAAAAAAATTGAAGGGGACAACAGCCTACAAATTTTAA 342 0.3947 MYRLGGSSVTSSVESNLPSSAKIFVKGLPHSASEGRLMKVFSEFGEVNLVQLPIDEESGQSLGFAFIWFVKEESAQLAIQEMNGKFFDGRFIYVTIAKPGSSKKLKGTTAYKF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01397 113 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 10 104 - -
Phac3g01397 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Phac3g01397 113 Gene3D - 6 109 IPR012677 -
Phac3g01397 113 SMART rrm1_1 22 95 IPR000504 GO:0003723
Phac3g01397 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Phac3g01397 113 SUPERFAMILY RNA-binding domain, RBD 14 102 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01397 Phac-Chr3 15612394 15615828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01397 23 99 Eukaryotic Initiation Factors Gene Family AT3G11400 38.961 8.96e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01397 - - gmx:100791917 171.4