Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01396 ATGGCACAACAGCTATTACCGACCTCATATCCACCTCAATATGTATCGCTTGGGCGGGTCAGTATTTCGAAGCCATCGATATGGGTTACAAAACCGACTACCGTTTCTTTACCATCATTTTCTACCTCATCTCCTCTTCGCTATGCGTCGTTTTGCTGCAGCTCTAGCGTTACCTCTTCTGTCGAATCCAATTTACCCTCTTCAGCAAAAATCTTCGTCAAAGGGCTACCTCACTCAGCCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGGGAAGTTAATTTAGTCCAGCTTCCAATAGATGAAGAATCTGGACAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCCCAACTGGCTATTCAAGAGATGAATGGAAAGTTTTTTGATGGCAGATTTATTTATGTTACAATTGCAAAGCCTGGTTCATCAAAAAAATTGAAGGGGACAACAGCCTACAAATTTTAA 486 0.4095 MAQQLLPTSYPPQYVSLGRVSISKPSIWVTKPTTVSLPSFSTSSPLRYASFCCSSSVTSSVESNLPSSAKIFVKGLPHSASEGRLMKVFSEFGEVNLVQLPIDEESGQSLGFAFIWFVKEESAQLAIQEMNGKFFDGRFIYVTIAKPGSSKKLKGTTAYKF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01396 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
Phac3g01396 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Phac3g01396 161 Gene3D - 53 156 IPR012677 -
Phac3g01396 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Phac3g01396 161 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 58 152 - -
Phac3g01396 161 SUPERFAMILY RNA-binding domain, RBD 62 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01396 Phac-Chr3 15612394 15615828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01396 71 147 Eukaryotic Initiation Factors Gene Family AT3G11400 38.961 2.06e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01396 - - gmx:100791917 186.808