Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01348 ATGGCCACGTCAAGACCACCCCTCTTGTTTTCATGCTTCATGCTACACCTTGCTTCAAACTTTGTTATTGCTCATTCAACAGAGAACAACTACTACAAGAACACTTCCCAACCTCTTTTAAAGTATATCCCTAAGAAACCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAAACAAAATTGGAGCTCAAATCGCCACGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGAGGCCACAGGAGGCAAACATGGTGCAATATACCAAGTCTCGGATCCCTCTGATGACCCAGTAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAAATGAGCCACTCTGGATCATTTTTGATAGAGACATGGTCATTACATTAAAAAATGAGCTTTTTATGAGTAGCTACAAGACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCCGATGGGCCTTGTATTACATTACAAAGTGTTAGACATATTATTATTCATGGCATTAGCATCCATGATTGCAAACCAGCCAAGCCTGGCCTTGTTAGGAGCACTCCTGATCATGTTGGCCATCGTCTAGGCTCAGATGGAGATGGCATTAGCATATTTTATTCCACCAATATTTGGATTGATCATTGTTTTTTGGCTCGTTCCACCGATGGTTTAATCGATGTTATTCGTGCCTCAACTGCAATTACCATCTCTAACAATTACTTTACTCAGCATGACAAAGTTATGCTGCTAGGACATAGTGACCAGTTCACAAAGGATAAAATAATGAAAGTGACTATAGCCTTCAACCAGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATGTAGCACCAAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGGGAAGAAAAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTAAATGATGCTTATTTTGTACCGTCTGGATTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATCTTTTGCTGCTGCTCCAGCATACATGGTGCCTGCGATAACTCTAAATGCAGGCCCCACAGATTGTACTGTTGGGAGAGCATGCTAG 1191 0.4215 MATSRPPLLFSCFMLHLASNFVIAHSTENNYYKNTSQPLLKYIPKKPLLNVIDSCWRAKQNWSSNRHALADCAIGFGKEATGGKHGAIYQVSDPSDDPVNPKPGTLRYGAIQNEPLWIIFDRDMVITLKNELFMSSYKTIDGRGAKVEIADGPCITLQSVRHIIIHGISIHDCKPAKPGLVRSTPDHVGHRLGSDGDGISIFYSTNIWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYVAPNDPNAKQVTKREGKKNWKSWKWRSSKDLFLNDAYFVPSGFGSCAPNYSPTQSFAAAPAYMVPAITLNAGPTDCTVGRAC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01348 396 SMART amb_all 123 320 IPR002022 -
Phac3g01348 396 Pfam Pectate lyase 135 314 IPR002022 -
Phac3g01348 396 PANTHER PECTATE LYASE 18-RELATED 39 394 IPR045032 GO:0030570
Phac3g01348 396 SUPERFAMILY Pectin lyase-like 70 394 IPR011050 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Phac3g01348 396 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Phac3g01348 396 Gene3D - 49 388 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01348 Phac-Chr3 14782090 14784051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01348 11 396 Polysaccharide Lyase AT4G22080 61.598 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01348 K01728 - gmx:100807483 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g01348 3 14782090 14784051 Phac3g01348 3 14782090 14784051 ECH