Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01335 ATGGAGGGTGGTTCTAACGAGGCCTCCAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCTAATCGTAATCTTAATGAAAACACAAACACAAATACCCTCTTCCTTCCCATGCCTTCTACTACTAATAATCACCACCCAAACCGCAATAGCATCCACGACAATAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAACCGCAACACGAACAACAACAACGATGGAAGTTCCTCTTCTTCTTCTGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGGAACTGCTAGGATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCACCAAACCCTTCAAGGAAGCAATGCTCTTCCTTCAAAGGATCGAGTGTCAGTTCAAATCTCTCACCATTTCTTCTTCCGACACTGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGATATTGATGTACACAACAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGGTAGTTTGAAGCAGGAATTCACGAAGAAGAGAAAAAAGGGCAAGTTGCCCAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAATTTGTAGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTGTGGGCAATCCCTTTCCCGATCTCTCTCACACAATGCTCTAA 1104 0.4547 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNRNLNENTNTNTLFLPMPSTTNNHHPNRNSIHDNNHNTNTSELGYFMEIHNRNTNNNNDGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTGCNEGGDRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFPDLSHTML* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01335 367 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Phac3g01335 367 MobiDBLite consensus disorder prediction 1 20 - -
Phac3g01335 367 SMART KNOX1_2 115 159 IPR005540 GO:0003677|GO:0005634
Phac3g01335 367 SMART ELK_2 250 271 IPR005539 GO:0003677
Phac3g01335 367 Pfam KNOX2 domain 168 214 IPR005541 GO:0003677|GO:0005634
Phac3g01335 367 SMART KNOX2_2 164 215 IPR005541 GO:0003677|GO:0005634
Phac3g01335 367 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Phac3g01335 367 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Phac3g01335 367 SMART HOX_1 272 337 IPR001356 GO:0003677
Phac3g01335 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 339 - -
Phac3g01335 367 FunFam Homeobox protein knotted-1-like 2 275 337 - -
Phac3g01335 367 Pfam KNOX1 domain 116 155 IPR005540 GO:0003677|GO:0005634
Phac3g01335 367 Pfam ELK domain 250 270 IPR005539 GO:0003677
Phac3g01335 367 SUPERFAMILY Homeodomain-like 272 348 IPR009057 -
Phac3g01335 367 Gene3D - 275 337 - -
Phac3g01335 367 CDD homeodomain 282 334 IPR001356 GO:0003677
Phac3g01335 367 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01335 Phac-Chr3 14670287 14675992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01335 117 367 Homeobox Transcription Factor Family AT1G62360 78.626 2.03e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac3g01335 KNOX2 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01335 - - gmx:100127401 593.578