Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01333 ATGGAGGGTGGTTCTAACGAGGCCTCCAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCTAATCGTAATCTTAATGAAAACACAAACACAAATACCCTCTTCCTTCCCATGCCTTCTACTACTAATAATCACCACCCAAACCGCAATAGCATCCACGACAATAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAACCGCAACACGAACAACAACAACGATGGAAGTTCCTCTTCTTCTTCTGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGCAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGGAACTGCTAGGATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCACCAAACCCTTCAAGGAAGCAATGCTCTTCCTTCAAAGGATCGAGTGTCAGTTCAAATCTCTCACCATTTCTTCTTCCGACACTGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGATATTGATGTACACAACAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGGTAGTTTGAAGCAGGAATTCACGAAGAAGAGAAAAAAGGGCAAGTTGCCCAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAATTTGTAGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTGTGGGCAATCCCTTTCCCGATCTCTCTCACACAATGCTCTAA 1107 0.4553 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNRNLNENTNTNTLFLPMPSTTNNHHPNRNSIHDNNHNTNTSELGYFMEIHNRNTNNNNDGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKQVGAPPEVVARLEEACASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTGCNEGGDRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFPDLSHTML* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01333 368 Gene3D - 276 338 - -
Phac3g01333 368 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Phac3g01333 368 Pfam ELK domain 251 271 IPR005539 GO:0003677
Phac3g01333 368 MobiDBLite consensus disorder prediction 1 20 - -
Phac3g01333 368 CDD homeodomain 283 335 IPR001356 GO:0003677
Phac3g01333 368 SMART ELK_2 251 272 IPR005539 GO:0003677
Phac3g01333 368 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Phac3g01333 368 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Phac3g01333 368 SMART KNOX1_2 115 160 IPR005540 GO:0003677|GO:0005634
Phac3g01333 368 Pfam KNOX2 domain 169 215 IPR005541 GO:0003677|GO:0005634
Phac3g01333 368 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Phac3g01333 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 340 - -
Phac3g01333 368 SMART HOX_1 273 338 IPR001356 GO:0003677
Phac3g01333 368 Pfam KNOX1 domain 116 156 IPR005540 GO:0003677|GO:0005634
Phac3g01333 368 FunFam Homeobox protein knotted-1-like 2 276 338 - -
Phac3g01333 368 SUPERFAMILY Homeodomain-like 273 349 IPR009057 -
Phac3g01333 368 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01333 Phac-Chr3 14670287 14675992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01333 117 368 Homeobox Transcription Factor Family AT1G62360 78.327 1.80e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac3g01333 KNOX2 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01333 - - gmx:100127401 588.956