Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01297 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCCCCACCGATCACCACCGTCACTCCTCCAAACGAAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAGTCTGTGTGAGGATGCGGAAAGAGGAAGCGGTGAATTCGTGGTCTGGCTCCTCCGGCGCCGCCGGAAGCGGCTGTTCCGCGGCCTTGCAGAAGCAGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCGGCCGGAAACACGATTGTGATGCAGGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCGGTGTTTGAACAGAGGCTAATTTATCGCGGGAAGCAGCTTCAGTGGGAGCAGACTCTCGCCGAGTGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGTATGCGCAGTACTGAACACCCTCAAGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTCTGCTGTGGTGAGGCTGTTCACGATTCCTTGAAGACTATCAAGGGGTTAATCACCAGTTACTTGAGCATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCCTATGCAGGTAACAAGGAATGTGCTGATTCTTGTGTTAGGCACTTTTTGAGTGCTTGCCGGAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCGTGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGATGTAATGACCCTTTGTATCTCTATTGTCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCTTACGCTGGTTCTGATAATGCTAAGGGGTTGGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGCTAATTGCTTGTTGATGGACTTGGAGTCGAGTATGCAATCCCCCACGGCCGAGGGGCCTTTGTCTAATGATATTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAACGGTTCTATGGCTGAAGACAAAAGCAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTTCATTCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATTGACCAGAGCTTGGTTGGCCAGGAAATGATGGAAGGTGATGATCTTTATACTGCGTGGTCTCACTATCTTTCCATCTTGAAGGAGTTGTATCAAATATCTAAGCTTTATGATGGTGCTGAAGATAAGCTTTGGAGTGTTTTGAGGCTACATAGAAGTGTTCTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTGTTGGCTGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGCGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAACCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGGGGACTATACTTAA 1758 0.4659 MSMIETPAVHHLSGGPTDHHRHSSKRKLDEEDDGDFSDLVCVRMRKEEAVNSWSGSSGAAGSGCSAALQKQRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGEAVHDSLKTIKGLITSYLSMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKECADSCVRHFLSACRNTLSKALHGQCACVVLEFCKLLRRVGCNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELANCLLMDLESSMQSPTAEGPLSNDIVDFTAFLVPLRTGIKEQQAVNGSMAEDKSNKDLLHAKEIEYLHCLFIQLLNKIDQCLQKIDQSLVGQEMMEGDDLYTAWSHYLSILKELYQISKLYDGAEDKLWSVLRLHRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPGDYT* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01297 585 SUPERFAMILY Ubiquitin-like 75 162 IPR029071 -
Phac3g01297 585 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
Phac3g01297 585 MobiDBLite consensus disorder prediction 1 32 - -
Phac3g01297 585 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 68 163 - -
Phac3g01297 585 Gene3D Hect, E3 ligase catalytic domains 463 585 - -
Phac3g01297 585 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 75 582 - -
Phac3g01297 585 SMART ubq_7 75 147 IPR000626 GO:0005515
Phac3g01297 585 SUPERFAMILY Hect, E3 ligase catalytic domain 500 581 IPR035983 GO:0004842
Phac3g01297 585 Gene3D - 68 164 - -
Phac3g01297 585 PRINTS Ubiquitin signature 128 149 IPR019956 -
Phac3g01297 585 PRINTS Ubiquitin signature 107 127 IPR019956 -
Phac3g01297 585 PRINTS Ubiquitin signature 86 106 IPR019956 -
Phac3g01297 585 MobiDBLite consensus disorder prediction 14 32 - -
Phac3g01297 585 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
Phac3g01297 585 ProSiteProfiles HECT domain profile. 525 585 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01297 Phac-Chr3 13912746 13915567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01297 75 149 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 4.42e-12 62.0