Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01225 ATGAACACGAGTAGGCAGGTAGCAGGAGACAACAACCACACAGCGGATGAGAGCAACGAATGCACTGTGAGGGAGCAAGACCGTTTCATGCCAATCGCAAATGTGATCAGGATCATGCGAAAGATTCTTCCTCCACATGCCAAGATCTCAGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAACGAGCGTTGCCAGAGGGAACAACGCAAGACCATAACTGCTGAGGACGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAGCCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATAAGAGGTGAATCACTGGGGAAGAGGACTATTGAATACACTCCTATGGGTGTTGGCGTTGCTACTGCTTTTGTGCCACCACAGTTTCACCCAAATGGATACTATGGTGCTGCCATGGGAGCTTACGTTGCGCCACCAAATGCTGCGTCCTCTCATCACCATGGAATGCCAAATACTGAACCGAATGCTCGCTCCATGTGA 564 0.4947 MNTSRQVAGDNNHTADESNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSIRGESLGKRTIEYTPMGVGVATAFVPPQFHPNGYYGAAMGAYVAPPNAASSHHHGMPNTEPNARSM* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01225 187 MobiDBLite consensus disorder prediction 1 21 - -
Phac3g01225 187 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Phac3g01225 187 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Phac3g01225 187 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Phac3g01225 187 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phac3g01225 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Phac3g01225 187 MobiDBLite consensus disorder prediction 1 16 - -
Phac3g01225 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phac3g01225 187 FunFam Nuclear transcription factor Y subunit B-6 18 134 - -
Phac3g01225 187 SUPERFAMILY Histone-fold 26 123 IPR009072 GO:0046982
Phac3g01225 187 Gene3D Histone, subunit A 16 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01225 Phac-Chr3 12133120 12134933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01225 20 119 CCAAT-HAP3 Transcription Factor Family AT5G47670 94.000 6.79e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phac3g01225 CBFD_NFYB_HMF 4.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01225 K08065 - gmx:100800011 288.5