Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g01136 ATGATGCAGCCAGGACCCGGCATGGCCCAACAACCCAACCAACAATACCCACAACAGCAGCAACAGCAACAGCAACCCTACATGATGATGCCCCCTCAGCCGCAGCCCCCTCAGATGTGGGCTCCATCGGCCCAGCCTCCACCGCAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAGAATTACCTCTATACGTGTTTTGCGCACACAGGCGAGGTGGCTTCAGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACCAGTCGTGCTGGTGCTGAGAGAATCCTTCAAACATACAACGGAACCATTATGCCAAACGGTGGTCAGAACTTCAGATTGAACTGGGCTTCTTTTAGTGCGGGTGATAGGCGTCATGACGACAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTCGGGCACGGTATCCCTCGGTTAAGGGTGCCAAAGTTGTAATTGATAGACTCACTGGTCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCTGCCTCTAATAAAAACCCTAGCACTCAGTCCCAGCCAAAAGGGTGTCAAGAGGCTCTGTCATCTCGGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCATGGCCTTGTGTAG 819 0.5055 MMQPGPGMAQQPNQQYPQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKGCQEALSSRSLELISAEMVTILVHGLV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g01136 272 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Phac3g01136 272 CDD RRM1_SECp43_like 64 144 - -
Phac3g01136 272 CDD RRM2_SECp43_like 155 234 - -
Phac3g01136 272 Gene3D - 6 146 IPR012677 -
Phac3g01136 272 SUPERFAMILY RNA-binding domain, RBD 143 244 IPR035979 GO:0003676
Phac3g01136 272 SMART rrm1_1 64 139 IPR000504 GO:0003723
Phac3g01136 272 SMART rrm1_1 157 231 IPR000504 GO:0003723
Phac3g01136 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 235 IPR000504 GO:0003723
Phac3g01136 272 MobiDBLite consensus disorder prediction 1 58 - -
Phac3g01136 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 130 IPR000504 GO:0003723
Phac3g01136 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 221 IPR000504 GO:0003723
Phac3g01136 272 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 243 - -
Phac3g01136 272 FunFam Polyadenylate-binding protein RBP45 5 147 - -
Phac3g01136 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 143 IPR000504 GO:0003723
Phac3g01136 272 Gene3D - 147 245 IPR012677 -
Phac3g01136 272 MobiDBLite consensus disorder prediction 29 54 - -
Phac3g01136 272 FunFam Polyadenylate-binding protein RBP45C 148 240 - -
Phac3g01136 272 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g01136 Phac-Chr3 11318174 11322653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g01136 64 257 Eukaryotic Initiation Factors Gene Family AT4G34110 27.586 3.75e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g01136 - - gmx:100796848 398.667